Basic Information

Insect: Globia sparganii
Gene Symbol: -
Assembly: GCA_949316385.1
Location: OX438682.1:6233406-6241178[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0021 0.21 13.1 0.8 1 23 86 109 86 109 0.97

2 14 0.5 51 5.7 1.8 2 23 182 205 181 205 0.91

3 14 0.0017 0.17 13.5 0.4 1 23 209 231 209 231 0.96

4 14 1.4 1.4e+02 4.2 1.4 1 23 236 259 236 259 0.87

5 14 0.0015 0.16 13.6 0.9 1 23 334 357 334 357 0.94

6 14 0.066 6.7 8.4 0.3 2 23 384 406 383 406 0.96

7 14 0.0021 0.22 13.1 2.3 2 23 429 450 428 450 0.96

8 14 0.00014 0.014 16.8 0.2 1 23 454 476 454 476 0.95

9 14 0.0033 0.33 12.5 0.9 1 23 481 504 481 504 0.98

10 14 0.0014 0.14 13.7 1.4 1 23 511 534 511 534 0.95

11 14 0.00014 0.014 16.9 0.5 2 23 542 564 541 564 0.95

12 14 0.00017 0.017 16.6 3.1 1 23 570 592 570 592 0.97

13 14 1.1e-05 0.0011 20.3 1.8 1 23 598 620 598 620 0.99

14 14 2.8e-06 0.00029 22.2 2.7 1 23 626 649 626 649 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0021	0.21	13.1	0.8	1	23	86	109	86	109	0.97
2	14	0.5	51	5.7	1.8	2	23	182	205	181	205	0.91
3	14	0.0017	0.17	13.5	0.4	1	23	209	231	209	231	0.96
4	14	1.4	1.4e+02	4.2	1.4	1	23	236	259	236	259	0.87
5	14	0.0015	0.16	13.6	0.9	1	23	334	357	334	357	0.94
6	14	0.066	6.7	8.4	0.3	2	23	384	406	383	406	0.96
7	14	0.0021	0.22	13.1	2.3	2	23	429	450	428	450	0.96
8	14	0.00014	0.014	16.8	0.2	1	23	454	476	454	476	0.95
9	14	0.0033	0.33	12.5	0.9	1	23	481	504	481	504	0.98
10	14	0.0014	0.14	13.7	1.4	1	23	511	534	511	534	0.95
11	14	0.00014	0.014	16.9	0.5	2	23	542	564	541	564	0.95
12	14	0.00017	0.017	16.6	3.1	1	23	570	592	570	592	0.97
13	14	1.1e-05	0.0011	20.3	1.8	1	23	598	620	598	620	0.99
14	14	2.8e-06	0.00029	22.2	2.7	1	23	626	649	626	649	0.98

Sequence Information

Coding Sequence: ATGAGCGAAGAACTTGACAATAACCGAATCATTTTCTTtatagataaacaagaaaaagtgGCCACAGCTAAGGAAATCAAAGTAGAGCCCAAAGCTGAAGAAACTGTAGTACTTCAGGAagagcaaataaaaataaatccagaGACAGCGCCTCGACCACGCATAAAGCGACTACTGCACAAGCATCTACACAATCTAAAAATAATCCTAGAATCTACTAACGCCACGATGATACTCAAACATGGAGATAAGGGATACATGTGCTGCTACTGCACGGAAGCTTTCCAAGAACCCATAAATTTGAAAGTACACACTTTAACGGAacatcaaaatacaaaaaagttcTATGGAAACATTACAGCTAATGGACCATCTAGGTTCTTAGTTAAACTTGACATCACAAACCTAAAATGCATACTTTGCAGCGCCAATATAGACTCTCTCGAAGATCTATTCGTCCATCTGACAGAGAAACATAATAAGAACTTCCACACTGATatacaaaatcaaatatttcCTTTCAAGTTTAATGCAGAGGAACTGAAATGCTATCAGTGTCCTAGTGACGTCGTTTTCGCTACGTTCAGCGCATTACACGAGCATATGCACAAGCACTACCGACACTTCGTTTGTAACGAGTGTGATGCTGGTTTCATTAATCACATATCATTATCCAGACATAGCGTTACTCACACGAAAGGAACCTTCGTCTGCCGACATTGTTCTGCTGTATTCGACAACGTATTCAAGAGAAGAAACCACGAGATGGGCAGCCATAAGAAACctggcaaattaaataaatgccaTTTCTGCAATGAagGTGGTCAACAAAGAACTGTTGAGGAAAAAGAAACGAACGGCAATGACTTTAcggaaaatataaatgaaaaagaaCTAAAAATAACACCCAGGACCGAACTATTAAAACATCGAAGTAACATTAAAGAAGTCCTTCTTAATTCTAACGCAACGCCTGTAAGACGGTACGGAGGGATCGGATACACGTGCAGCTACTGTCCAGACCAGTTCGAACACCCTGCGGATCTTAAGAAACATACTCTAGAGAACCACAGAAATGTATCGGAAGCAAACTTTATGAAAAACATGAACATGTCCGAATATATCGTCAAGTTAGATATAACTTCATTGAAATGCAAGCTTTGTGACAGTAATATGAATACTCTAGATAACTTAATAGACCATCTAAAAAGCGTACATGAGAAAAAAATCGACAAGGATCATGTAAACCATATCTTTCCTTTCAAATTCGGCAATGATTTACTGATATGCAATATTTGCTCGAACACTTTTAGCAAGTTCAGGACTCTTGTTAGACATATGCATATTCATTACAGGAATTATATTTGCACCGTTTGCGACACTGGATTCGCCAACCGTAACTCATTAACACAACATTTAGTTAATCACAAAACAGGGGCATTTGTTTGTGACTACTGTCCAAAATTCTATCCTACTCTTGTAAAAAAACGAATGCACGTAAGAACATCCCACACCCACGTAGACGCTACTTATAAATGTGGTTATTGTCAAGAAACTTTTAAAGATCATGGACAAAAGGAAGCTCATGTAACTTCTGAACATGGTGTGGTATCATTAAAAAGTGTATGTCAAGCTTGCAACAAAGTATTTCCCAATCGGAAGAAACTTAACATTCACATTAAAAGAGACCATCTAATGGAAAGGCCACACAAATGTAAGGAGTGTGACATGTCGTTTTATTCCACGACAGGGCTAAAAAGTCATATGGTCAAGCATACAGGATTGAAAGATTTTCAGTGCTCAATATGTCTGAAGAAATATGGAAGGAAGAAGACACTGAATGCTCACATGCAGACACATTCTGAGGAGAAAAGGTTCAAATGTGAAAAGTGTGGGCAGAAATTTACGCAGAAAAGTACTTGGAGAGGACATATGAGGTCCAAACATGGAGAAATTGTTTAA
Protein Sequence: MSEELDNNRIIFFIDKQEKVATAKEIKVEPKAEETVVLQEEQIKINPETAPRPRIKRLLHKHLHNLKIILESTNATMILKHGDKGYMCCYCTEAFQEPINLKVHTLTEHQNTKKFYGNITANGPSRFLVKLDITNLKCILCSANIDSLEDLFVHLTEKHNKNFHTDIQNQIFPFKFNAEELKCYQCPSDVVFATFSALHEHMHKHYRHFVCNECDAGFINHISLSRHSVTHTKGTFVCRHCSAVFDNVFKRRNHEMGSHKKPGKLNKCHFCNEGGQQRTVEEKETNGNDFTENINEKELKITPRTELLKHRSNIKEVLLNSNATPVRRYGGIGYTCSYCPDQFEHPADLKKHTLENHRNVSEANFMKNMNMSEYIVKLDITSLKCKLCDSNMNTLDNLIDHLKSVHEKKIDKDHVNHIFPFKFGNDLLICNICSNTFSKFRTLVRHMHIHYRNYICTVCDTGFANRNSLTQHLVNHKTGAFVCDYCPKFYPTLVKKRMHVRTSHTHVDATYKCGYCQETFKDHGQKEAHVTSEHGVVSLKSVCQACNKVFPNRKKLNIHIKRDHLMERPHKCKECDMSFYSTTGLKSHMVKHTGLKDFQCSICLKKYGRKKTLNAHMQTHSEEKRFKCEKCGQKFTQKSTWRGHMRSKHGEIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00906437;
90% Identity: iTF_00122756;
80% Identity: -