Gspa024474.1
Basic Information
- Insect
- Globia sparganii
- Gene Symbol
- Zfy1
- Assembly
- GCA_949316385.1
- Location
- OX438671.1:764749-771405[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.047 4.8 8.9 0.3 2 23 243 264 242 264 0.97 2 13 0.15 16 7.3 0.3 6 23 276 294 276 294 0.95 3 13 7.8e-08 7.9e-06 27.1 1.0 2 23 350 371 350 371 0.97 4 13 1.7e-05 0.0017 19.8 2.6 1 23 377 400 377 400 0.96 5 13 0.0045 0.46 12.1 0.0 1 23 406 428 406 428 0.97 6 13 1.4e-06 0.00015 23.1 2.0 1 23 434 456 434 456 0.98 7 13 0.41 41 6.0 3.5 1 23 580 602 580 602 0.95 8 13 0.00039 0.04 15.4 2.0 2 23 609 631 608 631 0.92 9 13 4.1e-06 0.00042 21.7 1.5 1 23 637 659 637 659 0.98 10 13 1.2e-06 0.00012 23.3 4.4 1 23 665 687 665 687 0.98 11 13 0.00022 0.022 16.2 0.3 1 23 693 715 693 715 0.98 12 13 0.0005 0.05 15.1 2.6 1 23 721 743 721 743 0.92 13 13 0.00091 0.092 14.3 1.7 1 23 749 772 749 772 0.93
Sequence Information
- Coding Sequence
- atgagTAATAAAAATGAACCAATACTTTTACTGCCGAACCAGTCTCCGGCCATCGCGCAGAAGATGAGCATCCTGGTACCGCTGCTCAACTCGCCCACAAACCTTAGTAATGTCCGAGACTTCTCCAATGTGTGTCGGACATGTGCCACCATCACAGAGTTTGTTATGCCCATATTTAGTGGAGAAGGGCTGCAGAACAACTTAGCTGATAAAATAAAGAGACACCTACCAATACAGGTACAGGAGAACGACGAGCTACCACTGGTGGTGTGCTACCAGTGTTCAAGCACCCTGCTGGCATGGCATGAGCTGGTGAAGTGTTCCATACAGGCTGATGCAGCCCTGCGTGCAAAGATTTCCAGCCTACGGAAAACAAATGCACCTAACGTTACCGTTAAATCAAGTTCAAGTATAGAAGAGGAAGCACAGAGCAAGTTGTTTTACACAAGTGTCAGAAATGCCCTCAATGACTTTCATATTGATCTGGATGAAGATGGTACGGACGTAGAGTTTGTTTGCCAAAAGTGTGTGGAGAAGCCAGCATTGACCACTGTGCACAGCCTCGCTGAACATATCCGACACGACCACTTTCCGGACACACTCGACTATACTGTTAAAATATTCATCACTAACTTCATAACGTTCGAACAAGTGCTAGTGGAGGATTCTGACAGAGAAACACAATCAGACACTAAAGAGAAGTCCCAAATAGTTCTGCCCAGTCTACGCTGTCCGTTCTGCGCGAGTGTATTCTCTTCGGCTACGCGGCTCGTGTACCATCTCAACAAACACGTGGAGGTGAGCATGGCGGCCGGCGCTAAGTGCTGCGACCTCGTCTACAGCGACAAGAAACACTTCGTGCAACACTTGCAAGAAGCACACGTCAACAGGACAGCCGACGAGCCAGTGCCAGTGTGCGTCAGCTGTGGCTTCACCGCAAACCATGGCGAAGAAATGAGACAGCATTATAAAGACGCGCACAACGATGTGAAAATTGCGAAAGAGAAAAAAGTAGATAGTCCAAACAACCAGAAGTACATCCCAGCGGTGTGCCCAGAGTGTAACAAGACGTTCTCCAACAAGTACAACATGTTCGCGCACATGCGCAGTCACACGCACACTGCGGTCTACCCGTGCGACAAGTGCACCCGGACCTACCGCAACCAGGGCAATCTTACCCATCACAAGAGGCTTGCGCACCAAGGAATACTCAACTTCATATGCGTCGAGTGCGGGGAAGCGTTCCCCAGTCGGTCAGAGCGCGACATACACGCGCGCATACACTCGGGAGAGACGCCCTACAAATGCCCACACTGCGGCAAGTCGTACCGCGCCAAGAACACGCTCACACGACACCTCGAGATACACGCAGACATACGCAAATACGATTGCAAGATTTGCACCAAAAAGAGCCCCTGCGACTTGCCCGAGGATCCCCGCAGTGCCTCCTCTGAGCTGTCCGATGACGAGCCGCTGGCCACATTCGCTACCAAAAAGCCCGCGAAACTCTATACCAACTTCTACAGAGCACTCGTGAACTTCAGAGATCATTTTGTTAATGATCAGCATCATGAGGATTATCTTGACTTCACTGACTCGAGTGTGTCTGACGCTGAAGAGAATGACGTGGACAGGTTCGACGACCTGACGCATTGCAACATGAGGCGAGACAGATTGGACGAGGAGACGAGGCTAGAGCTGAGAGAAGTGCAGAACAAAATCGACAACAAGACGTACTACACGTGTAAGATCTGCAGCAAGAACCTGAGCTCTGCGCACACGTACCTGTTCCACAAGCGCATCCACACGGGCGAGCGGCCGTGCGTGTGCCACGTGTGCGGCAAGCAGTTCCGCGCGCCCAACGGACTGCAGCGGCACCTCACGGAGACGCACGAGCGCGTGCGCCGGTACAACTGCTCGCTCTGTACCAAGAACTTTGCCAACTCACAGAATCTCAAGCAACACTTACGGATACACACCGGAGAGAAGCCTTTCGTGTGTTCTCACTGCGGGAAGAGATTCACTCAGAGTGGTTCGTTACACGTGCATCTGAAGACACACAGTGAACACTTTCCTTATGAGTGCGCGGAGTGCGGGGCTAAATTCAGACTGCGGTCGGGGCTGGTGCGGCACAAACTGAAGCACACGGGCGAGCGGCCGCACATGTGCGCGACGTGCGGCAAGGGCTTCCGGCAGAGACACGAGCTTACGACGCACAGCCTCGCGCACAGCGGCGTCGCGCCGCACGCCTGCGCCGCCTGCCCGCGCGCCTTCCGCCAGCGCCGCGCTCTGCGGCACCACGTGCGGCGCGTGCACGACGCGGAGCCTCCCGACATCGCCTACAACGTCACGCACTACTAG
- Protein Sequence
- MSNKNEPILLLPNQSPAIAQKMSILVPLLNSPTNLSNVRDFSNVCRTCATITEFVMPIFSGEGLQNNLADKIKRHLPIQVQENDELPLVVCYQCSSTLLAWHELVKCSIQADAALRAKISSLRKTNAPNVTVKSSSSIEEEAQSKLFYTSVRNALNDFHIDLDEDGTDVEFVCQKCVEKPALTTVHSLAEHIRHDHFPDTLDYTVKIFITNFITFEQVLVEDSDRETQSDTKEKSQIVLPSLRCPFCASVFSSATRLVYHLNKHVEVSMAAGAKCCDLVYSDKKHFVQHLQEAHVNRTADEPVPVCVSCGFTANHGEEMRQHYKDAHNDVKIAKEKKVDSPNNQKYIPAVCPECNKTFSNKYNMFAHMRSHTHTAVYPCDKCTRTYRNQGNLTHHKRLAHQGILNFICVECGEAFPSRSERDIHARIHSGETPYKCPHCGKSYRAKNTLTRHLEIHADIRKYDCKICTKKSPCDLPEDPRSASSELSDDEPLATFATKKPAKLYTNFYRALVNFRDHFVNDQHHEDYLDFTDSSVSDAEENDVDRFDDLTHCNMRRDRLDEETRLELREVQNKIDNKTYYTCKICSKNLSSAHTYLFHKRIHTGERPCVCHVCGKQFRAPNGLQRHLTETHERVRRYNCSLCTKNFANSQNLKQHLRIHTGEKPFVCSHCGKRFTQSGSLHVHLKTHSEHFPYECAECGAKFRLRSGLVRHKLKHTGERPHMCATCGKGFRQRHELTTHSLAHSGVAPHACAACPRAFRQRRALRHHVRRVHDAEPPDIAYNVTHY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01230874;
- 90% Identity
- iTF_00123588;
- 80% Identity
- -