Gspa034279.1
Basic Information
- Insect
- Globia sparganii
- Gene Symbol
- -
- Assembly
- GCA_949316385.1
- Location
- OX438682.1:6253227-6257625[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0032 0.32 12.6 0.1 1 23 8 31 8 31 0.94 2 17 0.091 9.2 8.0 0.0 2 23 64 86 63 86 0.96 3 17 0.14 15 7.4 5.3 2 23 109 130 108 130 0.96 4 17 0.00014 0.014 16.8 0.2 1 23 134 156 134 156 0.97 5 17 0.2 20 6.9 2.4 1 19 161 179 161 184 0.79 6 17 0.062 6.3 8.5 1.7 2 23 192 214 192 214 0.94 7 17 0.0011 0.11 14.1 1.0 1 23 221 244 221 244 0.97 8 17 0.00038 0.039 15.5 2.0 1 23 250 272 250 272 0.99 9 17 5.5e-07 5.5e-05 24.4 0.7 1 23 278 300 278 300 0.99 10 17 0.0027 0.27 12.8 0.8 1 23 379 402 379 402 0.97 11 17 6.9 7e+02 2.1 4.6 2 23 475 498 474 498 0.88 12 17 0.0017 0.17 13.4 0.2 1 23 502 524 502 524 0.97 13 17 0.9 91 4.9 0.3 2 23 560 582 560 582 0.93 14 17 2.2e-05 0.0022 19.4 0.8 1 23 589 612 589 612 0.97 15 17 0.0036 0.36 12.4 4.9 1 23 618 640 618 640 0.97 16 17 2.6e-05 0.0026 19.2 0.8 1 23 646 668 646 668 0.99 17 17 1e-07 1e-05 26.7 0.3 1 23 674 697 674 697 0.97
Sequence Information
- Coding Sequence
- ATGCGTCGCGGAGGCGTGGGGTACGTGTGCAGTTACTGCTTCGAAGAGTTCCCAGAGGCTATGGATCTAAAAAAGCATACACTGGCCGATCATACATCTAACCCTACAGAATCAGACCCTAGAGTTGGATACTCTTCTAAAACCGCTTCCATGGCAGAATATAACATCAAACTAGACATCACCAACCTCGAGTGTACGGAATGTGCTACACCCATTGACACTCTAGAAGATTTACTAACCCACATGCAAAAAGAGCATAAAAAAGTCTTGCACACTGACATTAAAAGTCATATCATACCTTTCAAATTTGAAACAGATGATCTTACTTGCTGCTTATGTCCCAGTACTTTCGACAGGTTTAAAAAGCTCCAAGAGCATATGCACTCGCATTACAGGAACTACATTTGTGACGTCTGCGATACCGGGTTTGTTTCCCAGGGAAGTTTCTCTAGACATCGCAGCATACACTTAAAAGGAGTCTACCCTTGCAGCTACTGCCCGAAGGTTTTCGATACGATGTTGAAAAAGAGATCTCATGAGAGATGTAACCATACTCACACAGATGTGCTAAATAGATGCGTATACTGCAATAAAGGCTATAAAAACTACCATACTCGAGAACTACACATGTCTGAAGTCCACGGTGTTAAGCCAACCGAATACAAATGCAATGCTTGCGACAGGTCTTTCACCACCAAGCGTATACTGAGTGTCCACGTAAAAAGAGATCATCTGTTAGAGAGGAGATACAAGTGTTTGACTTGTGACATGAGATTCTTTTCTTCCAATGAAGTTCAAAAACATATGCTAAAACACACTGGGGAGAAGGAGTTCCAGTGCGAAATATGTTTGAAATCATATGGAAGAAAATCCACTTTAAGAGCTCATATGAGGATCCATAACAATGATCGACGATTTGAATataaacaagaaaaagtgGCTACCGCTAAGGAAATCAAAGTAGAGCCCAAAGCTGAAGAAACTGTATTACTTGAGGAAcagccaataaaaataaatccagaGAGAGCGCCTCGGCCACGCATAAAGCGACTACTGCACAAGCATctacacaatttaaaaataatcctaGAATCTACTAACGCCACGATGATACTCAAACATGGAGATAAGGGATACATGTGCTGCTACTGCACGGAAGCTTTCCAAGAACccataaatttgaaaatacatACTTTGACGGAACATCAGAATGCAGAAAAATTCTATGGCAACATTAAAGCCAAAGGACCCTCTGTATTCCTAGTTAAACTTGACATCACCAACCTAAAATGCATGCTTTGCAGCGTCAATATAGACTCTCTCGTAGATCTATTCAACCATCTGACAGAGAAACATAATAAGAACTTCCACACTGATatacaaaatcaaatatttcCTTTCAAGTTCAATACGAAGCAACTGAAATGCTGCCAATGTACTAGTGACGTCGTTTTCGCCACGTTCAGCGCATTACACGAACATATGCACAAGCACTACCAACACTTCGTTTGTAACGAGTGTGGTTCTGGATTTATCAATCGTATGTCATTATCCAGTCATAGCGCCACTCACACAAAAGGAACTTTCGTCTGCCGACATTGTCCTGACATATTCGACAACGTGTTAAAAAGAAGAAACCACGAGATGCGTCACCATAGCCGAACTGGAAAATCAAACAGATGCAATTTCTGCAATGAAGGTTTTAACGAATATATTGATAAGGAAATGCATCTGTCTACGGTTCATGGTGTTACACCACGAAAATATAGCTGCTCTGCATGTGATAGGAACTTTACAACTAGTAGTCTTTTAAGCGCACATGTCAGACGCTTCCATCTGATGCAGAAAAGTCACAAATGTTCAGAGTGCGACAAAGCATTCTTCAGAGATTGCGAcctaaaaaatcattttttggtTCATACAGGAGCGAAAGACTTCAAATGTGAAGTCTGTTCTAAGTTTCTTGCTACGAAATCTGTTCTGACTCAGCATATGAGGATTCATAACAATGATAGGCGTTTTAAATGTACAATATGTGGTAAGGCGTTTGTGCAGAAACCTAGCTTGAACTGGCACATGAGGGCAAAGCACGCAGATGCTTATTAA
- Protein Sequence
- MRRGGVGYVCSYCFEEFPEAMDLKKHTLADHTSNPTESDPRVGYSSKTASMAEYNIKLDITNLECTECATPIDTLEDLLTHMQKEHKKVLHTDIKSHIIPFKFETDDLTCCLCPSTFDRFKKLQEHMHSHYRNYICDVCDTGFVSQGSFSRHRSIHLKGVYPCSYCPKVFDTMLKKRSHERCNHTHTDVLNRCVYCNKGYKNYHTRELHMSEVHGVKPTEYKCNACDRSFTTKRILSVHVKRDHLLERRYKCLTCDMRFFSSNEVQKHMLKHTGEKEFQCEICLKSYGRKSTLRAHMRIHNNDRRFEYKQEKVATAKEIKVEPKAEETVLLEEQPIKINPERAPRPRIKRLLHKHLHNLKIILESTNATMILKHGDKGYMCCYCTEAFQEPINLKIHTLTEHQNAEKFYGNIKAKGPSVFLVKLDITNLKCMLCSVNIDSLVDLFNHLTEKHNKNFHTDIQNQIFPFKFNTKQLKCCQCTSDVVFATFSALHEHMHKHYQHFVCNECGSGFINRMSLSSHSATHTKGTFVCRHCPDIFDNVLKRRNHEMRHHSRTGKSNRCNFCNEGFNEYIDKEMHLSTVHGVTPRKYSCSACDRNFTTSSLLSAHVRRFHLMQKSHKCSECDKAFFRDCDLKNHFLVHTGAKDFKCEVCSKFLATKSVLTQHMRIHNNDRRFKCTICGKAFVQKPSLNWHMRAKHADAY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -