Gspa024475.1
Basic Information
- Insect
- Globia sparganii
- Gene Symbol
- -
- Assembly
- GCA_949316385.1
- Location
- OX438671.1:771485-774944[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.61 61 5.4 0.8 2 23 33 53 33 53 0.95 2 13 1e-05 0.001 20.5 1.2 1 23 59 82 59 82 0.95 3 13 1.5e-05 0.0016 19.9 4.5 1 23 88 110 88 110 0.96 4 13 2e-05 0.002 19.5 0.1 1 23 116 138 116 138 0.98 5 13 5.6e-05 0.0057 18.1 0.1 1 23 143 165 143 165 0.97 6 13 0.00046 0.047 15.2 4.1 5 23 174 192 171 192 0.96 7 13 0.66 67 5.3 1.8 1 23 252 273 252 273 0.91 8 13 0.13 13 7.5 2.8 2 23 598 620 598 620 0.96 9 13 6.6e-06 0.00066 21.0 3.2 1 23 626 648 626 648 0.97 10 13 6.3e-05 0.0064 17.9 1.5 1 23 654 676 654 676 0.98 11 13 0.00029 0.029 15.9 2.1 2 23 683 704 682 704 0.97 12 13 3.2e-06 0.00033 22.0 0.8 1 23 710 732 710 732 0.98 13 13 0.00016 0.016 16.6 1.9 1 23 737 760 737 760 0.96
Sequence Information
- Coding Sequence
- ATGCCAGAAGAAAGCGCCGAAGAAGACAACAAAACTAAAGTCGAAATTATCGAGAAACCGGAGTTTACAATAACCGAGAATGGAAAGCGATACGCGAAGTGTGGCGTGTGTCACAAGAGTGTGTCCATGGGGGGGTGGACGCGGCACACGCGTGCGCACCGCGGCGAGAGGCGCCACAGCTGCCACACGTGCGGGCTCGCCTTCAACGACAGCGGCAACCTGGCGCGCCACACGCGGGCTATACACTCCAATCAACGACCACACGCCTGCCGCACGTGCCCCAAAACATTCTCACGGAAATCTCACCTGGAAGACCACGTAAAGTCTCATTCAGAGACCAGGACATTCGTGTGTGATATATGCGGGAAGGGATCCAAATCAAGCGCAGCACTACGCATGCACGCGCGCACGCACGATGCGTGCCGGTTCCCGTGCGTGCAGTGTGGCGCACGGTTCAAGCGGCGCGGCGAGCTGAACGCGCACGTGTCTGTGCATACTGGGGAGAAGGCACATGTCTGCCACTGCGGGAAATCTTTCCGATTGCGAAGCCAGCTGACAGCACATACTAGAGTGCATCAAAAAACACGGGAGCAGGAAACGAAAGAGCCAACCAATGCTAGCAACATACTAGGGTTGAAGCCCGAACTGTCTCGTCCGCAGCCGCAGCAATACCGCACATGCGTGTACTGCGCGAGCACGCATCCCGTCGCCTCCTACCGGAAGCACCTCGTCGTCGAGCACTCTCACCGGCTGTTCCACTGCGAGGAGTGTGACACCTTCGTCGACAGGAAGGATTTCGTCGTGCACATGTCCTTCCACGCCCTACACTACACCGCAAAGGGCATTAACCGAAAGAAATTTAAGAAGAAGGAAGATACTGTCAGGCAGATTCCCAGCACAGTGCCTCCAGCCCGCGCTCCACAGTGTCCACCGAAAACCCAAAGTCCACAGTGCGCATCGACAGCCGAAAATTCACAGTGCTTACCGATAACCCAAAGTCCACAGTGCGCACCGACAGCCGAAAATTCACAGTGCTTACCGATAACACAAAGTCCACAGTGCGCACCGACAGCCGAAAATTCACAGTGCGCACCGACAGCCGAAAATTCACAGTGCTTACTGATAACCCAAAGTCCACAGTGCGCACCGACAGCCGAAAATTCACAGTGCGCACCGACAGCCGAAAATTCACAGTGCTTACTGATAACCCAAAGTCCACAGTGCGCACCGAAAACCGAAAATCCACAGTGCTCACCGAAAACCGAAAGTCTACAGTGCGCACCGAAAACCGAAAGTCCACAGTGCGCACCGAAAAGCGAACGTAAACTAAGCATTAAAACAGATATAAATCCCCCAGAGGTGGTTAAAACCAAAACGAGTGACCAAGAGAATGAGTTCTCAGATCACAGTGACATGGACGGCTTCGAACCTCTACCTGAGTCAGTGTTCGAAGCTATCGAAGACTCACAAGACGGCCAGCATTTAGTAGATAGTACCACTCACACGTCTGAGAATCAGCCACACAGTGACGAGTCCAAAATATCTTCACAACccgaaaacaataatttaagtaCTCCTGCTCCGagtttggaaaaaaattataaatttaataattgtTCAGTAGTTATAAAGCcattcaatataaataattgtgCCCAAATGAATATCGCAATTAAAAATAGTGAAATAAACAACGATCCAGCCAATAAAACTCCCCCAGGAACTACTGACGCTAGTACTAGTGGTAATCACCCGACTGACGAAAAGGAGAAGAGGAACCAGAAGATACGAAAGTGTCCCTTTTGTTCTAAAGAATGCAGAGCATCGTCCAGCTACTTCTACCACCTGAAATACGTCCACAAAGAAAGCAAGGAACACGAATGCGAAGTGTGCGGCAGAAAGTTCAACACCAGATCCTGTTTGACACAACACATGGCCATACACACCGCACAGTACGAGTTCGAATGCCAACTTTGTCAGAAACAGTTCAAGACTAAAGCGAGCCTTTACATTCACGAGCAGACGCACAGCGGTAAGAAGTCGTGGTCGTGCAGCCAATGCGAAACGTCGTTCAGATGGAAGACGCAGCTGCAGAGGCACATGAAAAGACACGCGGCGGAGAAGGGGCACGTCTGTGACACGTGCGGGCGCGGGTTCAGTGTGCGGAGCGATCTGCTGCGGCACGCTCGCACGCACACCGCAGGGAATTTCACCTGTGATAAATGTGGACAGAAATTCGCTCAGCTGCGGTATTTGAAAGTGCACACTACGAAGCAACACTGGACCAATGTTACGAAGGGATCTAAGTAA
- Protein Sequence
- MPEESAEEDNKTKVEIIEKPEFTITENGKRYAKCGVCHKSVSMGGWTRHTRAHRGERRHSCHTCGLAFNDSGNLARHTRAIHSNQRPHACRTCPKTFSRKSHLEDHVKSHSETRTFVCDICGKGSKSSAALRMHARTHDACRFPCVQCGARFKRRGELNAHVSVHTGEKAHVCHCGKSFRLRSQLTAHTRVHQKTREQETKEPTNASNILGLKPELSRPQPQQYRTCVYCASTHPVASYRKHLVVEHSHRLFHCEECDTFVDRKDFVVHMSFHALHYTAKGINRKKFKKKEDTVRQIPSTVPPARAPQCPPKTQSPQCASTAENSQCLPITQSPQCAPTAENSQCLPITQSPQCAPTAENSQCAPTAENSQCLLITQSPQCAPTAENSQCAPTAENSQCLLITQSPQCAPKTENPQCSPKTESLQCAPKTESPQCAPKSERKLSIKTDINPPEVVKTKTSDQENEFSDHSDMDGFEPLPESVFEAIEDSQDGQHLVDSTTHTSENQPHSDESKISSQPENNNLSTPAPSLEKNYKFNNCSVVIKPFNINNCAQMNIAIKNSEINNDPANKTPPGTTDASTSGNHPTDEKEKRNQKIRKCPFCSKECRASSSYFYHLKYVHKESKEHECEVCGRKFNTRSCLTQHMAIHTAQYEFECQLCQKQFKTKASLYIHEQTHSGKKSWSCSQCETSFRWKTQLQRHMKRHAAEKGHVCDTCGRGFSVRSDLLRHARTHTAGNFTCDKCGQKFAQLRYLKVHTTKQHWTNVTKGSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00925051;
- 90% Identity
- -
- 80% Identity
- -