Gspa033758.1
Basic Information
- Insect
- Globia sparganii
- Gene Symbol
- -
- Assembly
- GCA_949316385.1
- Location
- OX438682.1:2001897-2006281[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-09 6.3e-07 30.1 0.0 4 42 16 54 14 56 0.90 2 2 3.7 1.5e+03 0.1 0.0 23 32 657 666 655 670 0.86
Sequence Information
- Coding Sequence
- ATGTCATCTGCACtacgaaaaaaagaaaaaagatatgAACAAAGCACTCTTGAAGAAGCTGTACGGATGGTACAAGCGCAGCAGATATCCCTGTCCAAAGCCAGTGTTCAATTTAACATTCCAAAGGGTACACTTCACAATAAAATTCACGGGAAAACGGCCCTCCAATGTAAAAAAGGGCCAGGAAAACTGTTATCGGATGACGAAGAAGATAAAATTGCTACCTGGATTTTAAATATGGCCAAAATTGGGTATCCTGTCAACACAAATGATGTCAGAGAGACTGTGGCACAAATTTTTGAAATTAAAGGATCAGACCTGAAGCCAGGCAAAAAGTGGATGAAACTGTTTTTGCAAAGGCACCCTAACATCACAAAAAGACATGCAGAAATTATTTCGAAAGCAAGAGCTTTAGTTACAGAGCCAATGATTAGGAAATGGTTTGAAGGTTTGCGACAACATCTGCAAGAGGTATGTGCTGATGATATATTAGACAATCCCGAGCGAATTTTTAATCTGGACGAAACTGGTGTACAGCTGTGCCCGAAAACCGGAGTTATTTTAGCACCTAAAAACTATCGACAGGAAAAACAAAGTATTACTGTGTTATGCAACTTTTCTGCTAGCGGTGGcatagttacaccatttattgtATACCCCTTGCAAAGAATATCAAAAGAAGTTGCTCAATCAGTTCCAGATGACTGGGGTATTGGAAGATCAGATTCAGGTTGGATGACAGGTCAAACGTTCTTGCACTATATCAAAGAAATCTATCTGCCTTGGCTCCAGAAGAATAGGGTTCCACTTCCGGCGCTTCTCCTTGTTGACGGCCACAAAAGTCACATAAATTTGGAGTTGCACGAATTTTGTGCTCAAAGCCAAATTATTCTCTATTGTCTGCATCCCAATACGACACATATCCTACAACCCTGCGATGTAGGAATATTTGGCCCTCTGAAAGCAGCATGGAAAAATGCAGcaagaaaacacaaaaataaagataatgttCAGATTACGAGGTCAAACTTTGCAAAAGTATTTGCACAGTCTTTTGATGTGTCTATGAAGAAACCCGTGATAGTTAATGCATTTAAAGCATGTGGAATTTTCCCATTTAACCCTAATGCTGTGGATTATTCAAAATGCATGTCGAATAGACAAGAAGAAATCGAGCATGATATATCTTTAAATGATTATAAAACAACAGTTGAGGtaatcgaaaaaaaattaaacaaaaatatactgGTCAAGTATAATGAATACAGAAGATACAATAAGACATGTAAGAGTAGTCTTTTCAAATTTTGGAACAAGTGCAAAAATAAAGTGGACAACATCTTACTATCGCAATCGTCCAATATTGATGATTCTGTAATAAACTGTTCGAGGATAGATCATTCTAACACGGACATGCACGCAAGCAATCCAGAAGGGATATTAATGCCTCAAGAACAGCGTCAAGAAGGAGAATTATCAATTACTCATAAAACACAGCTTCGAGAAGGAGATTTGACTCTTGGGACAAATACTTTCATTGATGGCATTATGGATATAGAAAATATGCCGATTGAAATAGAAGGAGTGACTTTTCTAATGGACGAGGCTTTAGGAGATACGAACGAGAACTGTTTGACACCAAGTATAGGAATAGCACCTGGTGGCAATCAACAAGATGTCATAGAATTTGTGGAACCCCACTCATACACAACACATGTGCTTGATTTGACAAACACCGCATCTTTTGCTGATTGGGCAGCGCCTCAAACAACTTCTACGCCTGTTTCatcaaagcaagcaattccatTGCCTTGGTACACTGATGGTGATAAATGTGATGACACTGTACTGAATATATCGCAGCCAGTTGATGTGCCGAATAATCAAGGAACATCTCAGAACCACAAATTTAGTCCGATCATCCAGGATTTGTCGCGGCAAGTTGATGAGCCGAACAATGAAGAATCATCCCAAATCTATGACGTACCAAATAATAGTCAGCATACCCGTGATGTTTctcttgaaaataataaaccgGGCTGTTCTAAAGTATTGAATGATAAAATTGATGAGTTGCTGAGACTTCCTGAACGCAAAAAAGGCACGAAACGTAAACTGTCAAAATCGCCAATACCTCTAGCAATAACTTCTAAAAAGTTTAAAGAATACTTGGAACTAAAAGAAAACGAAAAGAAACAGAAAGCAGAAGacataaaaaacagaaaaattcaGCGTGAACAAAAGAAAgcagaaaaagaaaaaaccaTCAGAGATAAGAAATTAAAAGGAATGAAAACAAATACTAAGATCAGTAACGACAAAGATATTGCTTCATCTACTGGACCAGTACAAGCTGATCAAGTAGATGAAACAATAACTTCAAATAAGGCACTTATGATTCCagctttgaaaaaaacaatgacaaataatttgtatgtaattaACGATTGTATCCCAGAGACTGAAATGACCAACAATAACAACGAAAGTCTGACTAAATATAAGGAGAATATAAATTTTGGAGATTATGTTGTTGTAGAATTTGAGACGAATAAACGAAACCGCTACTATGTCGGGCAAGTGCTAATGTgtgattatgaaaataatttcatcaaagTTAGGTGTTTGAGAAAGAAAGCCAGCAAATTCGACAGTTTGATATATTTCGTTGAACCTTCTACTGCTGATTTAACTGAAGTGTCGACATCAGCTATTAAAAATCTTTTACCGTGTCCTCGAATTGGAAGAAGAGGTATGATTACTTTTGAGAATGCTCAATATGATCTCAATTTATGtgaataa
- Protein Sequence
- MSSALRKKEKRYEQSTLEEAVRMVQAQQISLSKASVQFNIPKGTLHNKIHGKTALQCKKGPGKLLSDDEEDKIATWILNMAKIGYPVNTNDVRETVAQIFEIKGSDLKPGKKWMKLFLQRHPNITKRHAEIISKARALVTEPMIRKWFEGLRQHLQEVCADDILDNPERIFNLDETGVQLCPKTGVILAPKNYRQEKQSITVLCNFSASGGIVTPFIVYPLQRISKEVAQSVPDDWGIGRSDSGWMTGQTFLHYIKEIYLPWLQKNRVPLPALLLVDGHKSHINLELHEFCAQSQIILYCLHPNTTHILQPCDVGIFGPLKAAWKNAARKHKNKDNVQITRSNFAKVFAQSFDVSMKKPVIVNAFKACGIFPFNPNAVDYSKCMSNRQEEIEHDISLNDYKTTVEVIEKKLNKNILVKYNEYRRYNKTCKSSLFKFWNKCKNKVDNILLSQSSNIDDSVINCSRIDHSNTDMHASNPEGILMPQEQRQEGELSITHKTQLREGDLTLGTNTFIDGIMDIENMPIEIEGVTFLMDEALGDTNENCLTPSIGIAPGGNQQDVIEFVEPHSYTTHVLDLTNTASFADWAAPQTTSTPVSSKQAIPLPWYTDGDKCDDTVLNISQPVDVPNNQGTSQNHKFSPIIQDLSRQVDEPNNEESSQIYDVPNNSQHTRDVSLENNKPGCSKVLNDKIDELLRLPERKKGTKRKLSKSPIPLAITSKKFKEYLELKENEKKQKAEDIKNRKIQREQKKAEKEKTIRDKKLKGMKTNTKISNDKDIASSTGPVQADQVDETITSNKALMIPALKKTMTNNLYVINDCIPETEMTNNNNESLTKYKENINFGDYVVVEFETNKRNRYYVGQVLMCDYENNFIKVRCLRKKASKFDSLIYFVEPSTADLTEVSTSAIKNLLPCPRIGRRGMITFENAQYDLNLCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00622747;
- 90% Identity
- iTF_01525911;
- 80% Identity
- -