Gale022804.1
Basic Information
- Insect
- Glaucopsyche alexis
- Gene Symbol
- -
- Assembly
- GCA_905404095.1
- Location
- FR990053.1:21004746-21031327[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.029 3.2 9.5 0.1 1 23 49 71 49 71 0.93 2 17 5.2 5.7e+02 2.4 2.3 1 23 78 101 78 101 0.89 3 17 0.55 60 5.5 2.9 1 23 105 127 105 127 0.95 4 17 2.5e-05 0.0028 19.2 0.7 1 23 132 155 132 155 0.97 5 17 0.051 5.5 8.8 0.4 1 23 159 182 159 183 0.93 6 17 8.6 9.4e+02 1.7 0.1 3 12 195 204 194 214 0.80 7 17 1.3 1.4e+02 4.4 3.0 3 23 267 288 265 288 0.95 8 17 1 1.1e+02 4.7 0.7 2 10 303 311 302 313 0.90 9 17 1 1.1e+02 4.7 0.7 2 10 342 350 341 352 0.90 10 17 1 1.1e+02 4.7 0.7 2 10 434 442 433 444 0.90 11 17 1 1.1e+02 4.7 0.7 2 10 465 473 464 475 0.90 12 17 1 1.1e+02 4.7 0.7 2 10 496 504 495 506 0.90 13 17 1 1.1e+02 4.7 0.7 2 10 527 535 526 537 0.90 14 17 1 1.1e+02 4.7 0.7 2 10 558 566 557 568 0.90 15 17 9.4e-05 0.01 17.4 0.5 2 23 589 610 588 610 0.93 16 17 0.00014 0.015 16.9 1.7 1 23 634 657 634 658 0.94 17 17 0.12 13 7.6 1.1 1 22 664 685 664 687 0.89
Sequence Information
- Coding Sequence
- ATGTTCACTGTTTACTTATGTTTGTCGACCTTTGATAGAACTGTGCTGGACGGTGCGGTGTTCGACGTGGTGGACGTGCCGCTGGAGCGCGCGCTGGCGGAGATGGCGCGGCGCGAGAGCCGGGCGGAGTACCTCACCGCGCTGTATAGCTGCGACCTCTGCTACAAAGTGTTCGCCACGCCCACAGCCAGAGACGAGCACGCGCTGCGCCACAGTGATGTGATGGGCGAGTTCGAGTGCGTGGTGTGCCGCTGCCGGTGGCGCACGAGCAACGCCCTGCGCAAGCACTTCACGGAGAGCCACACGCGCGACCACATCTGCAAGAAGTGTCCCTTCACCACGAGGAATAGGGGCGTCGCGAAAAGACACGAGCGGTTCCACAAGGGCGTGAAGTTCCAGTGCTCGCAGTGCCCCAAGGATTTCGCGACGCAGTCGGCGTACCTGAGCCACCTGCGGCTGAAACACGTGTGCCGGTTCCCGTGCGCGCTGTGCGGGTTCACGTTCCCCACGCGCCGCGGCGTCGACTGGCACAAGCTCAAGAAACACAAGCGGGATAAGAACGCGGAGCTGGCGGGCCCGTACTGCGCGGAGTGCGACTTGCGGTTCGTCACGGACGAGGCGCACGACCGCCACCTGCAGCTGACGGCCGCGCACCGCCGGGACGACAGCAATGGGAGGCGCATACGTAACGACTACCATATGGCGGAGAAGAGAAAGTCTAAGTGGAAGACAGCTAAGGGGAAATCTGAGCACACGGAACCCGAACAGGCGGAGCCCGACCGCCGCGTCCTAGTTTGCTGCGAACAGTGTGGTATAGAGTGCAAGGGTTACCGTTCGTACGCGCAGCACTTCCGCCGCGAGCACCCCGGCTGCAACCGCACGCAGTACAGCGGCGCCGACCCCACCATGTGCGAGCACTGCGGCAAGTTCTTCCAGGTACTATGTCGCCGCGAGCACCCCGGTACTATGTCGCCGCGAGCACCCCGGTACAACCGCACGCAGTACAGCGCCGCCGATCCCACCATGTGCGAGCACTGCGGCAAGTTCTTCCAGGTACTATGTCGCCGCGAGCACCCCGGTACAACCGCACGCAGTACAGCGCCGCCGATCCCACCATGTGCGAGCACTGCGGCAAGTTCTTCCAGGTACTATGTCGCCGCGAGCACCCCGGTACAACCGCACGCAGTACAGCGCCGCCGATCCCACCATGTGCGAGCACCGCGGCAAGTTCTTCCAGGTACTATGTCGCCGCGAGCACCCCGGTACAACCGCACGCAGTACAGCGCCGCCGATCCCACCATGTGCGAGCACTGCGGCAAGTTCTTCCAGGTACTATGTCGCCGCGAGCACCCCGGCTGCGACCGCACGCAGTACAGCGCCGCCGATCCCACCATGTGCGAGCACTGCGGCAAGTTCTTCCAGGTACTATGTCGCTGCGAGCACCCCGGCTGCGACCGCACGCAGTACAGCGCCGCCGATCCCACCATGTGCGAGCACTGCGGCAAGTTCTTCCAGGTACTATGTCGCCGCGAGCACCCCGGCTGCGACCGCACGCAGTACAGCGCCGCCGATCCCACCATGTGCGAGCACTGCGGCAAGTTCTTCCAGGTACTATGTCGCCGCGAGCACCCCGGCTACGACCGCACGCAGTACAGCGCCGCCGATCCCACCATGTGCGAGCACTGCGGCAAGTTCTTCCAGGTACTATGTCGCCGCGAGCACCCCGGCTGCGACCGCACGCAGTACAGCGCCGCCGATCCCACCATGTGCGAGCACTGCGGCAAGTTCTTCCAGAACCCGTATCTGCTGCGAGCGCACGCGGGCGTGCACACAGACGCCCCGGCGCCGAGCGGTGCGCGACGCGCGGGCAGCCGACACGCGGGCACGCCGCACCGCGCGCACGCCTGCCCGCTCTGCCCCAAGCGCTTCACTGAGAAAAGCAACCGCGCTCGACACATCGTCACCATCCACCACGGCGCGGAGAGGCGATACCGCTGCGCCGTGTGCGAGAAGCGGTTCTGGGAGCGCAGCGGGCTGCAGACGCACTTCGACCACGTGCACCTCAAGAAGCCGTGGCCGAAACGCACGCGCCCGCCGCGGTCCCGCCCCGGGCCCGTGCCAGGGCAAGAGTTTGAGTCGACCGACAAGGACGCGAGCGCCGAGGCCTAG
- Protein Sequence
- MFTVYLCLSTFDRTVLDGAVFDVVDVPLERALAEMARRESRAEYLTALYSCDLCYKVFATPTARDEHALRHSDVMGEFECVVCRCRWRTSNALRKHFTESHTRDHICKKCPFTTRNRGVAKRHERFHKGVKFQCSQCPKDFATQSAYLSHLRLKHVCRFPCALCGFTFPTRRGVDWHKLKKHKRDKNAELAGPYCAECDLRFVTDEAHDRHLQLTAAHRRDDSNGRRIRNDYHMAEKRKSKWKTAKGKSEHTEPEQAEPDRRVLVCCEQCGIECKGYRSYAQHFRREHPGCNRTQYSGADPTMCEHCGKFFQVLCRREHPGTMSPRAPRYNRTQYSAADPTMCEHCGKFFQVLCRREHPGTTARSTAPPIPPCASTAASSSRYYVAASTPVQPHAVQRRRSHHVRAPRQVLPGTMSPRAPRYNRTQYSAADPTMCEHCGKFFQVLCRREHPGCDRTQYSAADPTMCEHCGKFFQVLCRCEHPGCDRTQYSAADPTMCEHCGKFFQVLCRREHPGCDRTQYSAADPTMCEHCGKFFQVLCRREHPGYDRTQYSAADPTMCEHCGKFFQVLCRREHPGCDRTQYSAADPTMCEHCGKFFQNPYLLRAHAGVHTDAPAPSGARRAGSRHAGTPHRAHACPLCPKRFTEKSNRARHIVTIHHGAERRYRCAVCEKRFWERSGLQTHFDHVHLKKPWPKRTRPPRSRPGPVPGQEFESTDKDASAEA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -