Basic Information

Insect: Glaucopsyche alexis
Gene Symbol: -
Assembly: GCA_905404095.1
Location: FR990054.1:6133232-6139388[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 5.8 6.3e+02 2.3 1.4 1 23 166 187 166 187 0.93

2 11 8 8.7e+02 1.8 0.3 2 23 192 213 192 213 0.92

3 11 0.32 35 6.3 3.0 2 23 220 242 219 242 0.93

4 11 7.5e-05 0.0082 17.7 0.7 2 23 251 273 250 273 0.92

5 11 0.0026 0.29 12.8 2.0 1 23 279 302 279 302 0.88

6 11 0.022 2.5 9.9 0.8 3 23 310 331 308 331 0.95

7 11 1.7 1.9e+02 3.9 1.4 3 21 338 356 337 357 0.93

8 11 2 2.2e+02 3.8 0.1 2 11 363 372 362 376 0.87

9 11 6.6e-05 0.0072 17.8 1.0 1 23 411 433 411 433 0.98

10 11 0.028 3 9.6 4.9 1 23 439 461 439 461 0.98

11 11 3.5e-07 3.9e-05 25.0 1.5 1 23 467 489 467 489 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	5.8	6.3e+02	2.3	1.4	1	23	166	187	166	187	0.93
2	11	8	8.7e+02	1.8	0.3	2	23	192	213	192	213	0.92
3	11	0.32	35	6.3	3.0	2	23	220	242	219	242	0.93
4	11	7.5e-05	0.0082	17.7	0.7	2	23	251	273	250	273	0.92
5	11	0.0026	0.29	12.8	2.0	1	23	279	302	279	302	0.88
6	11	0.022	2.5	9.9	0.8	3	23	310	331	308	331	0.95
7	11	1.7	1.9e+02	3.9	1.4	3	21	338	356	337	357	0.93
8	11	2	2.2e+02	3.8	0.1	2	11	363	372	362	376	0.87
9	11	6.6e-05	0.0072	17.8	1.0	1	23	411	433	411	433	0.98
10	11	0.028	3	9.6	4.9	1	23	439	461	439	461	0.98
11	11	3.5e-07	3.9e-05	25.0	1.5	1	23	467	489	467	489	0.99

Sequence Information

Coding Sequence: atgcagtgtCGTGCATGTTTAAAAACAAACTGTGAAAATACAAGTCGGCTCGACGAATTCAAAATTACGTGCTTCAATTTGATTACAGCGCTACGCATACGCAAGGGCGACAGCTTGCCACAACAGCTGTGCGAAAGTTGTACAAAAGATCTGAAACTATGTGTAGAATTCAGAGAAAAATGCATAACTTCCAATACTATACTTATCAGTGCGCAATCTTCGAATGAGGATTTGAAAGTTACCACCCAGATTAAGAAAGAGGATGTTCAAAATGGCTTAGAACAAGATgtgataaattataatatagacaATAAAAAAGAGGAAATACAAGTGAAGGATGAATACAACTTAGCACAAActgaagacaattttgtatatGAGTACATGTCtgACAACAAAGACAAGAACTCTGATGATAGTGGACAAACATCTGTTTTAAAAGGGAAAACTAGAAAAAGTGCACCAAGATTTAAGAAAGTGCGTAGATTTCAGAAATATGATTGTGGTCTTTGCGCAGAAAAACTAAAGAAGGATAAGTTATGTGAACATGTAAAAAGCCATGAAAATAACAATTACTGTAGTATATGCTCTTTTCAACTTAAAGAATGGGAGGCGAAGTTGCAGCATAGAATTTCACATTTAAATAAACCGAACTTGATATGTCACATATGTTTACGGACTTTTCAATCCTCGGTCTCTTTGGAATgtcattacaatattaaacATTTGGGTAAAATTGAAGACGGTATGAGATGTAAGCTGTGCAACAAAATCTACACCTCTGTCAGAAATTTGCAAAGACACATGGGATTAATGCACAAAAATAAGAATACTTACAAATGCAGTGATTGTTCTAAAGTTTTTCCTACTAAAAACGCTATAAATTATCACAATTTCAAATATCATGTAAagagaaaaaggttattttgtgGCGATTGTGATTATACAACCGAATTAAAGAACTCTATGAGGAAGCACATACTACGGAGGCACGCAGCGGAGAAGGTGTTCTGTAAACTTTGCAAGGCTCTGTTTGCAGACGATGGCGGTCTCAAACGACACAAGTGCAAATACAGTACCCAGTCTGTATGTCCCTTCTGTGGCATTGTGTTCGAAGTTCCGGTTAAGgtatataatcCGGTATGCGGCGGGCCtgagaaaattctgagcactgaaaatagaatagaaCAGATGATGCGACATCTAGAGACGCACAGCGACGAACGGAAGCACAAGTGCTCGCGCTGCGACGCCGCGTTCAAGTCGAGCGGCGCGCTGCGCGTACACCTGAGTAAGCACGACGGCGTGCGCGCGCACAGGTGCGAGCACTGTCCGGCGACGTTCTGGGCCCACTCCACGCTCAACAAACACCGCAGGGTACACACCGGTGAGAAACCATATGTTTGCAATATGTGTAACAAGGGTTTCACTGCTAACCATAATCTCAAAGTCCACATGAGAGTGCATGGTGTATTCAATCTCATAAAGAAAAAAGGTACTGAAGAGGATCCTACTGATAGTGTACAAGAATCTAACCAACGTAGTCCAATTGACTATTCATAA
Protein Sequence: MQCRACLKTNCENTSRLDEFKITCFNLITALRIRKGDSLPQQLCESCTKDLKLCVEFREKCITSNTILISAQSSNEDLKVTTQIKKEDVQNGLEQDVINYNIDNKKEEIQVKDEYNLAQTEDNFVYEYMSDNKDKNSDDSGQTSVLKGKTRKSAPRFKKVRRFQKYDCGLCAEKLKKDKLCEHVKSHENNNYCSICSFQLKEWEAKLQHRISHLNKPNLICHICLRTFQSSVSLECHYNIKHLGKIEDGMRCKLCNKIYTSVRNLQRHMGLMHKNKNTYKCSDCSKVFPTKNAINYHNFKYHVKRKRLFCGDCDYTTELKNSMRKHILRRHAAEKVFCKLCKALFADDGGLKRHKCKYSTQSVCPFCGIVFEVPVKVYNPVCGGPEKILSTENRIEQMMRHLETHSDERKHKCSRCDAAFKSSGALRVHLSKHDGVRAHRCEHCPATFWAHSTLNKHRRVHTGEKPYVCNMCNKGFTANHNLKVHMRVHGVFNLIKKKGTEEDPTDSVQESNQRSPIDYS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -