Gale024782.1
Basic Information
- Insect
- Glaucopsyche alexis
- Gene Symbol
- -
- Assembly
- GCA_905404095.1
- Location
- FR990055.1:3991726-4001622[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 4.2 4.6e+02 2.7 0.1 3 23 116 136 114 136 0.94 2 16 0.046 5 8.9 0.0 2 23 140 162 139 162 0.96 3 16 0.11 12 7.7 1.5 3 23 388 409 386 409 0.95 4 16 0.0024 0.27 12.9 0.2 1 20 417 436 417 438 0.95 5 16 0.12 13 7.6 0.7 2 23 448 469 447 469 0.93 6 16 0.68 75 5.2 0.2 1 23 485 508 485 508 0.86 7 16 0.14 16 7.3 1.7 1 21 517 537 517 540 0.84 8 16 7.5 8.2e+02 1.9 0.9 8 23 590 606 587 606 0.89 9 16 0.5 55 5.6 0.1 2 21 618 637 617 640 0.82 10 16 1.6e-05 0.0017 19.8 1.1 1 23 674 696 674 696 0.97 11 16 2.4e-06 0.00026 22.4 0.8 1 23 703 725 703 725 0.98 12 16 7.8e-05 0.0086 17.6 2.3 1 23 730 752 730 752 0.96 13 16 0.0072 0.79 11.4 2.3 1 23 758 780 758 780 0.97 14 16 3.6e-05 0.0039 18.7 1.2 1 23 786 808 786 808 0.93 15 16 0.00061 0.067 14.8 2.5 2 23 815 836 815 836 0.97 16 16 5.8 6.4e+02 2.3 0.7 2 9 844 851 843 858 0.87
Sequence Information
- Coding Sequence
- ATGTCGTCCGCAGAATCAGATGATGAGCCGCTCTCGATTTTGGCCGCAGCTAAAAAAGCAAACCCTCAGCCAGAGAAAGAAAACGTTGATGAAGATAGACATCCTATacctttaaaaaaaagaaagaagaCAGTGATTGTAAAAAAGTCGAGCATAActttaaaaatcaataaaaaactaCAAGAAATACTATCGCCTCCTACTATCCAACGACCTACTGATGTATGGCTATACTTGAAAGATCTGAATTCAACTGGACCGTACACTTGCTTATTATGCGCAGCAtggtttataaataaatcgaaAATGATCATGCACTATGCATTGAATCATAAGAAAGATTTTTGTGGAATATGCAGATACTTTGTACCAGACAGAGAGGCTTGGTTTGCACATGAAAAATTTCACACACCATGGCCATGCTCCCAATGTATTGAGGCATTTGCTACTGAACCAATGTTGAGGTTACACCTACGCACTGTCCACAATCTTGTCCACTGCCGACTCTGTCACTTCAGAGTACCAGCTGACGAGGAATATGATGCACACCTATATCAAAAACACAATGTCACTAATCCAATCATAAAAGAAGTAGAATGCTTATGGGAGCTTGACTATGATGAGCAAAAGTATGTTTGTCTTCTTTGTTCTAAAGgagataatttattttccacTTTCTTTAACCATTTCATGGGCTACCATCATTTTACCTTGAAATGCTTGACTGGTATTGTGGCTGGTAAAGACCCACCGTTTTTGGTGGAAGGGGCAGATGTCAGTGAACAGTTTGTTGAAGATCAATTGAAAGGGCTCACACGTCTTGGTTATGTTGATTTGGAGATGCAAAGCATGCCAGTTTCAGGAGAAATTACTGAACATCAGAATTCCCAAATGCTAGAAGCTGAGATTAAGCAAGAGACTTTTTCCGATGCTGAGGAGATAAAACTTGAAAATGCAGATAGTaaaatagaaatagaactaaACAGTGATTATGAAGGTGTTCAAGATTTTGATGTTACTCTAACAGAGGTGATAGTTTTAGAAAATAGTTATTTTGAGTATTTGGAAAGTACACAAAAGGCTCTGAATTCTAACACAGTGCCTGAAAACTCTGATATAATGTACAAACATATGAAACCAGAGTTACTAATGGGATTATTCTGCTCACTATGTGATTCAAAATTTCACACAGAGTCGGCCTTTTTGGTTCATATTTCCAAAATGCACAACATAAGGGTTGCACCTCTGTATTCGTGTAGAGTTTGTGCCACAACATTTGACACGCAGACCGAACTTAAAACACATATTACAGAGGAATTGGGGGACTTTGATGATCTGTGGATATGTCAGTTTTGTGACAGAGAATTCGACAATAGAGAGTCTTCTAGAAAACACTTAACAGAGCACTGGGATAGTTTGGAGTTTGATAACTGTTTTAGCCCGCATTTAGGGTTCAAGTGTAAATATTGTCCCACCTTATTCTGGAACGAGCCTGAACGGGAAGCTCATCAAATAAGGGCACATATCGACAAGCATAAGGACGATTTTTATAAATGCCAAAAATGTTCATTAATGTTTAGTGATAAGGTTTGGTTCATGTTTCATTATTTGGAGAAACATAAAAGTGAGGAAATTAAATATACGTATCTCTTCAAATGTTGTGTATGCTGCATAGTTCTGCAAAGTCTTGAGGAAACGAGATCACATTTTGAGAAACATCATCCGGAAGCAACAAAAATGTATTGTTCATTAGATCCCTGTAAATTTAAACCTCTGACACACAGGAAGTCATTAAAAGTACATGTAAAGaGTATCCACGGCTCCCCCAAGAGTCCCAAGCGCGAGTGTGTGCCGTGCGGCGTCTGCGGGCGCGGGTTCGCAAGCGCGCGCGCGTGCACCGCCCACGCGGCGCAGGCGCACGGCCCGGGCAAGTTCAAGTGCAAACTGTGTAGAGACGTGCTGAATACTATGGATGAGAGGAAGCTCCACTACCTCCTGCGTCACCCCGGCCGTCACCCGTTCGAGTGCGGGGACTGCGGCAAGTCCTTCCAATACAAGTCGTCGCTGTACATGCACAGGCAGGAGCACGCGCCCAACAGACAGGACTACAAGTGCGATTACTGCGGCAAGATATTTGCGAAGAAGGACTCGTTCCGCGAGCACGTGCAGATCCACTCGGGCCCGCGGCACGCCTGCTCGTACTGTCCAATGCGCTTCGTGCAGCGCTCCAACATGCTGCGCCACGAGCGCCGCCACACCGGCGAGCGGCCCTACGCCTGCGCGCACTGCCCGCGCACCTTCGCCGACAAGGGCGCCTGCACCTCGCACTCCAGGACACATTCGAAGGCTACGTCGTTCGCGTGTATCTACTGCGGTCAGACATTCGTTCAGAAGTCCAAGCTAACTTACCACATACGAAAACATACGGGAGAGAATTTGGAGTCGTGTACGGTGTGCTCCAAGTTATTCACGAGTGCATGTTCACTTCGTGAGCACATGAAGATACATGTGGAGAAGAAACAGATTGTCAAGTGTCCGCTGTGTGGTAAGCATACTTTTTTGAACTGCTTGCTTTGggataggatatttttatataGATATAAACAAATTCAAAAACTTTAA
- Protein Sequence
- MSSAESDDEPLSILAAAKKANPQPEKENVDEDRHPIPLKKRKKTVIVKKSSITLKINKKLQEILSPPTIQRPTDVWLYLKDLNSTGPYTCLLCAAWFINKSKMIMHYALNHKKDFCGICRYFVPDREAWFAHEKFHTPWPCSQCIEAFATEPMLRLHLRTVHNLVHCRLCHFRVPADEEYDAHLYQKHNVTNPIIKEVECLWELDYDEQKYVCLLCSKGDNLFSTFFNHFMGYHHFTLKCLTGIVAGKDPPFLVEGADVSEQFVEDQLKGLTRLGYVDLEMQSMPVSGEITEHQNSQMLEAEIKQETFSDAEEIKLENADSKIEIELNSDYEGVQDFDVTLTEVIVLENSYFEYLESTQKALNSNTVPENSDIMYKHMKPELLMGLFCSLCDSKFHTESAFLVHISKMHNIRVAPLYSCRVCATTFDTQTELKTHITEELGDFDDLWICQFCDREFDNRESSRKHLTEHWDSLEFDNCFSPHLGFKCKYCPTLFWNEPEREAHQIRAHIDKHKDDFYKCQKCSLMFSDKVWFMFHYLEKHKSEEIKYTYLFKCCVCCIVLQSLEETRSHFEKHHPEATKMYCSLDPCKFKPLTHRKSLKVHVKSIHGSPKSPKRECVPCGVCGRGFASARACTAHAAQAHGPGKFKCKLCRDVLNTMDERKLHYLLRHPGRHPFECGDCGKSFQYKSSLYMHRQEHAPNRQDYKCDYCGKIFAKKDSFREHVQIHSGPRHACSYCPMRFVQRSNMLRHERRHTGERPYACAHCPRTFADKGACTSHSRTHSKATSFACIYCGQTFVQKSKLTYHIRKHTGENLESCTVCSKLFTSACSLREHMKIHVEKKQIVKCPLCGKHTFLNCLLWDRIFLYRYKQIQKL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00289138;
- 90% Identity
- iTF_01178924;
- 80% Identity
- -