Basic Information

Insect: Glaucopsyche alexis
Gene Symbol: BCL11A
Assembly: GCA_905404095.1
Location: FR990060.1:6425687-6447984[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 4 4.4e+02 2.8 1.1 1 23 207 230 207 230 0.93

2 6 1.7e-05 0.0019 19.7 3.1 1 23 498 520 498 520 0.98

3 6 2.6e-07 2.8e-05 25.4 0.7 1 23 526 548 526 548 0.98

4 6 1e-06 0.00011 23.5 3.2 2 23 766 787 765 787 0.97

5 6 1.4e-05 0.0015 20.0 3.3 1 23 793 815 793 815 0.99

6 6 8.7e-05 0.0096 17.5 0.4 1 22 823 844 823 844 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	4	4.4e+02	2.8	1.1	1	23	207	230	207	230	0.93
2	6	1.7e-05	0.0019	19.7	3.1	1	23	498	520	498	520	0.98
3	6	2.6e-07	2.8e-05	25.4	0.7	1	23	526	548	526	548	0.98
4	6	1e-06	0.00011	23.5	3.2	2	23	766	787	765	787	0.97
5	6	1.4e-05	0.0015	20.0	3.3	1	23	793	815	793	815	0.99
6	6	8.7e-05	0.0096	17.5	0.4	1	22	823	844	823	844	0.97

Sequence Information

Coding Sequence: ATGTCGATGGACGACATGTCATATAAACAGGACAAAACACGTGGTCTTTCGGATGCGGACAGCGCGGCGGAGGGGGGCGGGGGGTCACCGACGCCCGCCGACACCCTCACCTGCGGCGCCTGCCGTCGAGCCTTCGCGCTGGCGGACATCGTGCGGTTCATCCAACACAAGATCAGCTCCTGCGACAAGGAGCTGACGTCGTATCACTGTTTTAGCGCCGgcCCTAACTCTGATCAAGAAGATGGCTCAAGGACGGGTCAAGTGGCCACAAACTCAAGTGGCAGGAGACCTTCTTTGCTCACAGCCCGAAGACCACCTAGTAGTAGAGTCCATACTCCACCACTGGCCAGTCCCTCCATGGCTCCTCCCGATCTCTTAGAAGATGGCGGCGCTTCGAGCACACCTAAAAGATTATTAGacgAAGCCGATGCAGAAGTATCAACACCTAAAAGAAGAGCATCAACATCACCGATGTCATCAAGCTCCCCCGACGAAGACATCAAACCGAAGATCAAGCAAGAACACATGGATACCACAGGATCACCTGACGAGCAGAAAAAGTCAAGAACAGAAGTAGCTGATGCTGAATCTAACACTATGCATAGTGAGCCGAGCAACTACGTCTGTTCCACGTGCAAGGCGCGCGTGCACTCCGCGTGGCGACTGGTCCAGCACGTGCAACACGTGCACGGCGTCAAGATCTACGTGGAGAGCATGCCGCAGCCGCCGCAGAACAAACAGAACCACTCGTCGTCCAGCACGTCCTCGTCGAGCTCCGGCTGCTCGTCATCAGGAGCGCCGCTCCCGCCGCCGTCTCTCCGCCATCACCCGTTACTACCGCCACCAGACATGCATTCCCCTTTTGGGGTTGGTGGTCTATTGCGCATGCCCTTGCCCGGCAGCTTACCCCCTCTCGCTCACCCTTCCGTCCCCCCGAACCCTTTATTCGCCCGCCCAAACCATCACGATCATAGATTTCGTATGGAGCAACTGGTTTCCGAACAGTTCCGTCACCACGGGTTGAACCTGGCAGCCGCCGCGGCAGCGGCGGTCGCCGCCAACTCCCTTCCTCCTCATCAGCCATTTCCATCGCCAGCGGATAGACCACCGGTAGTACCAAACTCAATTTCGGGTAGAGACCGAGCACCACCCGTTTCCCAACCCCTATCTTTGGAACCCCAGCTGGATTTTTACTCGCAGCGCTTGCGGCAACTGGCCGGTACGACCAGTCCAGGGGCGGCCACAGGCACATCGAGCTCTCCTAGCCCCAGGAAGCATTCGCCGCCGTTCGCTTCCCCGTCGCCCTCCCGAGTCGGCCAGACTCCTCCGGTGGGCGCCGGACCCGGAACGGTGGAAACGCCTAAAGAGGCTATAAGGGCACACAGTTCCCTGTCACCTGAACGACGAGTCGAACCACGGACTGCCGACGCACCGCCCTCGGATCGACCATCATCCACCCCACTAACGAAACGTTCCAACGATGAAGCAGTACATTCCTGTGAGTTTTGCGGTAAAAAGTTCCGTTATGAAAATAGCTTAATTGCGCACCGTCGTACACATACTGGAGAGAAACCTTTTAAATGCACCGAATGTGATGAAGCATTTGAAAGGGCCTCGAAACTAAAGCGCCACATGAAAGCTCATCGAGGTTCTGGTGGCAATACTGAAGAAGGAGAATCCGGCCCTGAAACTGGTGATGATGAATCTGAAGATGAGTTAGATGATGAGGAACTAGATGGAGAGGAAGAAGAGGAAAATGAGGATGGTGATGACATCGAAGAGGCTGAAGATCTCACAGTGTCGAATAGCAGCGCACCCGCTCCCCCGCTGCGTAAACAAACTCCGGCTGCACCAACGCAACCTCCATCTGCCTCTGTAGTTGGTGAACTAATGGACAAGTTTGGACTGTCGAATATTGCTCAATATAGTGAGGCTTTTAAACAAGCGCTACAAGAATCTGGTAATTCCCTTAAGTGGCAATTGGCTAAAGACCGCGATAACAATAATGGTCCCTCAGCCGATAAGCCGAATGGCATGCCACCTACGGCTGCACTACGTCTAAAAGAAGAATTCGCTAAGATGCCTCCCCAACCTCATCCGCTGTTTAACCCTTTTGAGAACCCTTTTGAGGCATCTAAACGAATGAAACTAGAGATGGACAGAGGCGAAGGTTGGTGGTTGCCAACATTACATGCTCAACGCCCACCAGAAAATATTTTCGATGGTCTCAAAAACAGTAGCAATGGATTATTACAAAACCCGCTGCTCAAATCAAAAGATGGCCGTCGCAATGACACGTGTGAATTCTGTGGTAAGGttttcaaaaattgttccaACTTGACTGTCCATCGTCGATCTCACACCGGCGAGAAGCCGTACAAATGCGAACTGTGTTCCTACGCCTGCGCCCAGAGCTCGAAGCTGACGAGGCATATGAAGACTCACGGCCGCCTCGGCAAGGATGTTTATAGATGTAGGTTCTGCGAGATGCCGTTCTCTGTGCCCTCGACCCTCGAAAAACATATGCGGAAGTGTGTAGTGAATCAAAGCAACGGTGCACCTCTCGCATTATCCGACGATTCTAATGCATGTCGTGACGAGGCGTCGTGA
Protein Sequence: MSMDDMSYKQDKTRGLSDADSAAEGGGGSPTPADTLTCGACRRAFALADIVRFIQHKISSCDKELTSYHCFSAGPNSDQEDGSRTGQVATNSSGRRPSLLTARRPPSSRVHTPPLASPSMAPPDLLEDGGASSTPKRLLDEADAEVSTPKRRASTSPMSSSSPDEDIKPKIKQEHMDTTGSPDEQKKSRTEVADAESNTMHSEPSNYVCSTCKARVHSAWRLVQHVQHVHGVKIYVESMPQPPQNKQNHSSSSTSSSSSGCSSSGAPLPPPSLRHHPLLPPPDMHSPFGVGGLLRMPLPGSLPPLAHPSVPPNPLFARPNHHDHRFRMEQLVSEQFRHHGLNLAAAAAAAVAANSLPPHQPFPSPADRPPVVPNSISGRDRAPPVSQPLSLEPQLDFYSQRLRQLAGTTSPGAATGTSSSPSPRKHSPPFASPSPSRVGQTPPVGAGPGTVETPKEAIRAHSSLSPERRVEPRTADAPPSDRPSSTPLTKRSNDEAVHSCEFCGKKFRYENSLIAHRRTHTGEKPFKCTECDEAFERASKLKRHMKAHRGSGGNTEEGESGPETGDDESEDELDDEELDGEEEEENEDGDDIEEAEDLTVSNSSAPAPPLRKQTPAAPTQPPSASVVGELMDKFGLSNIAQYSEAFKQALQESGNSLKWQLAKDRDNNNGPSADKPNGMPPTAALRLKEEFAKMPPQPHPLFNPFENPFEASKRMKLEMDRGEGWWLPTLHAQRPPENIFDGLKNSSNGLLQNPLLKSKDGRRNDTCEFCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMRKCVVNQSNGAPLALSDDSNACRDEAS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01209675;
90% Identity: iTF_01539114;
80% Identity: -