Basic Information

Insect: Glaucopsyche alexis
Gene Symbol: -
Assembly: GCA_905404095.1
Location: FR990044.1:26948101-26952803[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.016 1.7 10.4 0.1 2 23 216 238 215 238 0.92

2 9 0.21 23 6.8 1.6 2 23 311 332 310 332 0.95

3 9 1.2e-05 0.0013 20.2 1.9 1 23 336 358 336 358 0.98

4 9 0.081 8.9 8.1 1.7 1 13 363 375 363 376 0.93

5 9 9.7e-05 0.011 17.3 2.1 3 23 396 417 394 417 0.94

6 9 2e-07 2.2e-05 25.8 0.9 1 23 424 447 424 447 0.98

7 9 0.0014 0.16 13.6 0.3 1 23 453 475 453 475 0.96

8 9 1.5e-06 0.00016 23.0 2.5 1 23 481 503 481 503 0.99

9 9 7.2e-05 0.0078 17.7 1.4 1 23 509 532 509 532 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.016	1.7	10.4	0.1	2	23	216	238	215	238	0.92
2	9	0.21	23	6.8	1.6	2	23	311	332	310	332	0.95
3	9	1.2e-05	0.0013	20.2	1.9	1	23	336	358	336	358	0.98
4	9	0.081	8.9	8.1	1.7	1	13	363	375	363	376	0.93
5	9	9.7e-05	0.011	17.3	2.1	3	23	396	417	394	417	0.94
6	9	2e-07	2.2e-05	25.8	0.9	1	23	424	447	424	447	0.98
7	9	0.0014	0.16	13.6	0.3	1	23	453	475	453	475	0.96
8	9	1.5e-06	0.00016	23.0	2.5	1	23	481	503	481	503	0.99
9	9	7.2e-05	0.0078	17.7	1.4	1	23	509	532	509	532	0.97

Sequence Information

Coding Sequence: ATGAATAATTCATTATCATGCCGATGCTGTCTTCTACGTCCGCCAGATAAAAATTTAAGAAGCTCATATAGGTGTTTTGAAAGAACAGAAGTTTACGCTGATATGCTAAAGGAATGCTTCGAGATAAATATTGCAATAGAGACCGCAGAAAATGATAATGGAATTTGTGATGTATGCATTGTTCGTCTTCGAGATGCTTTTGAATTTAAACATCAAGTGATACGATGCCAAAAGGATTTTCAACATcgctttaataaaattaaagAAGAGTCACTACCAAATGTTAAAGAAGAGTTTGCAGatgctgatgatgataatgaaatattttatcttGAACTAAAAGAAGAATTATCAGATATTGAAGCTTTGAAAGATGATGAAAAGTTAGCTGAAATACTTGGACTTGATGAGATAACTGTGAAGAAAAAGGTGGACAGAAAGAAGAGTAGCAAGAAACGGCTCCTTAAGACAGAATGCAGTTCCAAAAAAGCTAATTTCAAATCGAACATAACCCTGACTTTAAGAAAACCATCATTTCCCGACATTCGTATAGTAAGTGAGCACAAAAAACATGCTATGAATGTTGAAAATATCATAAAGTATTCCAATTGTACGCCATTTTCTAATAAAACGCTGTCAGGTATAGTTTGTGCGTTCTGTAAGGAGACATACGCTAACACTCAAGACTTACGAGCACACACCCAGGACGTGCACAAGAAACCTGACATGACTTCGAACATGAAGAAAgtcgataaaaataatttgtcaaTAAAAATGGACATCACCGACTTAAAGTGCACCCTGTGTAATGCTAGTATGCACGGTATAACAAGTTTAAAGGATCACCTCACAAAACAACatgatattaaattttttccTGACATCTATGATTATATTCTCGAATTCAAACTGACAGATGAAGAAATGTTAAGCTGTGCACTTTGCCATTCGAAGTATGAAACATTCAAAATGCTATTGCAGCATATGAACGGGCACTACAGGAATTATATTTGCGAAGTGTGCGACATGGGATTTATAAATAAACACAGACTGAAAAATCATCAACGGACACACGATGTGGGCAATTTCAAATGTTCCTTTTGTGACAAAATCTTTAGTACGCGTGTAAGAAAAATGTGCCACGAGAAGTATACACACAATACCAACGCAAGGTACACAACAAACTGTCCGCACTGTGATCAATCGTTTACGAGTTATTATCAAAGAAACAGGCACATGGCTAATGAACACAATGCAGCCGCAGCGAcgtataaatgtaatatttgtGATAAATCGTTCAtattaaaatcaaaattaaCTGCACATATTAAAAAGGTACATCTCATGGAACGAAATCATATTTGTCCAGAGTGTGGACAgggatttttcataaaacaatCGTTGGACGAGCATATGATCAAACATAACGGCGAACGAGTTTTCAAATGTACAGTGTGTTACAAGTCATATGCAAGGAAAAAGACTTTGCGAGAGCACATGAGAATACATAATAATGATAGGCGTTTTAAATGTGGAGTGTGCGGATTGGCGTTCGTTCAAAAATGCAGTATGAAAAGCCACATGCTATCCAATCATGGGCTTAGTCTTACAGAGTATTTGAACACAAAACATGAAGTTAGCACCTAA
Protein Sequence: MNNSLSCRCCLLRPPDKNLRSSYRCFERTEVYADMLKECFEINIAIETAENDNGICDVCIVRLRDAFEFKHQVIRCQKDFQHRFNKIKEESLPNVKEEFADADDDNEIFYLELKEELSDIEALKDDEKLAEILGLDEITVKKKVDRKKSSKKRLLKTECSSKKANFKSNITLTLRKPSFPDIRIVSEHKKHAMNVENIIKYSNCTPFSNKTLSGIVCAFCKETYANTQDLRAHTQDVHKKPDMTSNMKKVDKNNLSIKMDITDLKCTLCNASMHGITSLKDHLTKQHDIKFFPDIYDYILEFKLTDEEMLSCALCHSKYETFKMLLQHMNGHYRNYICEVCDMGFINKHRLKNHQRTHDVGNFKCSFCDKIFSTRVRKMCHEKYTHNTNARYTTNCPHCDQSFTSYYQRNRHMANEHNAAAATYKCNICDKSFILKSKLTAHIKKVHLMERNHICPECGQGFFIKQSLDEHMIKHNGERVFKCTVCYKSYARKKTLREHMRIHNNDRRFKCGVCGLAFVQKCSMKSHMLSNHGLSLTEYLNTKHEVST*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01178950; iTF_00164653; iTF_00406127; iTF_01217747; iTF_01248467; iTF_00404091; iTF_00934111; iTF_00935071;
90% Identity: iTF_01178950;
80% Identity: -