Gale012266.1
Basic Information
- Insect
- Glaucopsyche alexis
- Gene Symbol
- -
- Assembly
- GCA_905404095.1
- Location
- FR990047.1:6839924-6854599[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.14 16 7.3 2.4 2 23 28 49 27 49 0.95 2 14 1.2 1.3e+02 4.4 0.2 1 23 61 85 61 85 0.89 3 14 7.3e-05 0.008 17.7 0.4 2 23 92 115 91 115 0.97 4 14 0.036 4 9.2 0.2 1 23 121 143 121 143 0.93 5 14 0.00086 0.094 14.3 4.4 1 23 149 171 149 171 0.98 6 14 3.9 4.2e+02 2.8 0.0 3 20 183 200 181 202 0.88 7 14 0.0049 0.54 11.9 0.2 1 23 280 302 280 302 0.98 8 14 1.3 1.4e+02 4.3 6.2 1 23 309 331 309 331 0.95 9 14 0.00072 0.079 14.6 1.8 1 23 364 387 364 387 0.95 10 14 0.0034 0.38 12.4 1.6 1 23 394 417 394 417 0.98 11 14 0.089 9.7 8.0 0.2 2 23 546 568 545 568 0.95 12 14 1.4 1.5e+02 4.3 0.2 2 23 587 607 586 607 0.87 13 14 2.8e-05 0.003 19.0 0.3 1 23 630 652 630 652 0.98 14 14 0.00029 0.032 15.8 0.6 3 23 660 681 658 681 0.95
Sequence Information
- Coding Sequence
- atgtttttttttaataaaactttgcTCTTACAGAAACCTCGAAAAAAGAAAGGCAAAAGCTTAACGGATGCTCAGATAGTAACATGCGATAACTGTCACGAATCATTTGGTTCCAAAGTGAGGCTGAAATTTCACATGCAATTCCACGAGTCCACTGCCATGCTAACCGCGGACGGCGAGTACGTATGCGCCGAGTGCGATGGCGCGACCTTCCCGAGCGAGACGGAGCTATTCGACCACGTGCACTTCCAGCACGATAAGCAGAGGCGCTGGCAGTGTCCAATGGAGGGCTGCGGAAAGACTTTCTTTTTACGGGCTACGCTTACGAAGCACAGCCGCACGCACACAGACACGCGCCGCTACGTGTGTGTCACATGCGGCAAGCGATTCCTCGACAAACAGACGCTAGACGAGCACGGCGTCACACATCTTCAGATCAAGCCGTTCTCGTGCCATATCTGCCTGAAGCAGCTGACGCGGCGGTCGCGGCTGCGCATGCACCTGCGCACACACGAGGaggagcccgcgccgcgcctcGTGCTCGCCTGCGCCGTGTGCCGGCGCGCCTTCGCCGGGTCCGCTGCAGCCACGGAGCACATAACAAGGTCGACTGAGTGCTTGGAAGTTTTTGCACTCGAACTAAAGAAGGACACCGAAACTGAACTAGTGTCACCTACTACCGGCATTGTAACGCAGAATTCTGGGAATATTCCAGAAATTTCCAAACTCAGCGATCCAATAGAGCGCGAGGTGAACAATAGCGAGAGCGCCGCGCTACTGGCTACCGTAGACGACGCCGCGCGTACGATCGTGCGCGTCGTCAACATAGAGAAGGCGTTCCGGTGCGAATATTGCGAGGATGTTTTCTACATGGAGGATGCTTTGAACaaacacagaataatacataaAGGAGTTAAAAATCCCTTCATCTGCCACATATGTAAAGTCAGTTTTGCGACGTATTCCAGATGTACCACCCACAAGACGACTCATGGGTTCTACAAGCGCAAAGAGAAAAGCGGCGCGACTAACGACGGTGGACCGAACGCGGGCATACTCGGCTACGGGGGATTCCCCGTCGCCAAACACTTTCTGTGCGAGGACTGCGGGCGCTCGTACCTGCACTGGACGTACCTGCAGGTGCACCGGCGCATGAAGCACGACAACCAGCACGTGCTCTTCCAGTGCAACGACTGCCACTCTACCTTCCCCAATAGTTGGAGTGCGGCGTACCACAGGAGGAAAGTACACGGGAAAAGTGCCGGCGACGACGGAATAACTAAAATCAACAAAGAGGGCTTTGGCAACGAAGAGTATGCTGACATACTGTACTGCTACGGTTTTTGTGATGGCAACGCAGCCGCTGCACGGGAAGAGTACCGGCGTCGTTTTCCCCGTCGAAATAATGTACCAAGTGCTGGAGTTTTTTCCGCGGCGTACCAACGCGTGCGGGAAAGTGGCTCTGTTCATCAAAGGCGACGTGATGCAGGAAGATCTCCTCGCTATGTTGTAGAAGACGAAGAGAGAATATTGGAACGTTTTGCAAGAGATCCGACCACCTCTACAAGAATTGTAGCGAAGCAACTGGGTTTAACGCAGTGGAAAGTGTGGTTCACCGTACATAGCGCTCGAATACCTTGTCGTGACTGTGACCAACTGCTTCCGAATAAAAACGCACTTTACAAGCATAGGCTAAAGGAGCATTCAGACCAATCGTTCGACGATATCAACACGATGTTATTAGAGGAGAAACCAGTGACTTGCGGGAAATGTGGCCTCCAAGTACAACAAGATTTGCAAAAACATCTCAgGGAGGTTCACGGTGAGGACCAACAAGCGTTCTCGTACGACGAGCATACGCGCGCGCTCGGCGCGAGCGAGCGTCGCTACCGCTGCGACCTTTGCGGCGTGTCCTTCAATAGGGCCGCCACGATGCGCAACCACCGTCAGATCCACAGCGGTATGAGGATGTGGGCGTGCGAGCGCTGCCCGCGCCGCTTCCGCATGCGCGCCGATCTGCGCACGCACCTGCGCCTCAAGCATCCCGCGCGTCTCGCCGTCATTGAGGTTACAGactaa
- Protein Sequence
- MFFFNKTLLLQKPRKKKGKSLTDAQIVTCDNCHESFGSKVRLKFHMQFHESTAMLTADGEYVCAECDGATFPSETELFDHVHFQHDKQRRWQCPMEGCGKTFFLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFSCHICLKQLTRRSRLRMHLRTHEEEPAPRLVLACAVCRRAFAGSAAATEHITRSTECLEVFALELKKDTETELVSPTTGIVTQNSGNIPEISKLSDPIEREVNNSESAALLATVDDAARTIVRVVNIEKAFRCEYCEDVFYMEDALNKHRIIHKGVKNPFICHICKVSFATYSRCTTHKTTHGFYKRKEKSGATNDGGPNAGILGYGGFPVAKHFLCEDCGRSYLHWTYLQVHRRMKHDNQHVLFQCNDCHSTFPNSWSAAYHRRKVHGKSAGDDGITKINKEGFGNEEYADILYCYGFCDGNAAAAREEYRRRFPRRNNVPSAGVFSAAYQRVRESGSVHQRRRDAGRSPRYVVEDEERILERFARDPTTSTRIVAKQLGLTQWKVWFTVHSARIPCRDCDQLLPNKNALYKHRLKEHSDQSFDDINTMLLEEKPVTCGKCGLQVQQDLQKHLREVHGEDQQAFSYDEHTRALGASERRYRCDLCGVSFNRAATMRNHRQIHSGMRMWACERCPRRFRMRADLRTHLRLKHPARLAVIEVTD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -