Basic Information

Insect: Glaucopsyche alexis
Gene Symbol: -
Assembly: GCA_905404095.1
Location: FR990044.1:25521329-25526578[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.031 3.4 9.5 0.7 1 23 276 298 276 298 0.97

2 10 0.77 84 5.0 0.1 3 23 322 343 320 343 0.92

3 10 0.04 4.4 9.1 0.0 2 23 366 387 365 387 0.95

4 10 0.048 5.3 8.8 1.3 1 23 391 413 391 413 0.96

5 10 0.0015 0.17 13.5 1.6 1 23 419 442 419 442 0.85

6 10 0.014 1.6 10.5 1.1 2 23 449 471 448 471 0.91

7 10 1.5e-06 0.00016 23.1 1.3 1 23 477 500 477 500 0.98

8 10 0.00036 0.039 15.5 1.4 1 23 506 528 506 528 0.98

9 10 1.7e-06 0.00018 22.9 1.8 1 23 534 556 534 556 0.99

10 10 1.9e-05 0.0021 19.6 2.6 1 23 562 584 562 585 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.031	3.4	9.5	0.7	1	23	276	298	276	298	0.97
2	10	0.77	84	5.0	0.1	3	23	322	343	320	343	0.92
3	10	0.04	4.4	9.1	0.0	2	23	366	387	365	387	0.95
4	10	0.048	5.3	8.8	1.3	1	23	391	413	391	413	0.96
5	10	0.0015	0.17	13.5	1.6	1	23	419	442	419	442	0.85
6	10	0.014	1.6	10.5	1.1	2	23	449	471	448	471	0.91
7	10	1.5e-06	0.00016	23.1	1.3	1	23	477	500	477	500	0.98
8	10	0.00036	0.039	15.5	1.4	1	23	506	528	506	528	0.98
9	10	1.7e-06	0.00018	22.9	1.8	1	23	534	556	534	556	0.99
10	10	1.9e-05	0.0021	19.6	2.6	1	23	562	584	562	585	0.96

Sequence Information

Coding Sequence: ATGTCGCTAATAAAGAGTAATGGCCCCCTCATAGATCCAGCGTTATGTAGATGCTGTCGGGCTATAAAGAAATGCAGAATACTTACAGCCGAATACACCTGGATGGAAACAAAAGAAGTATACGCGGACATGATAATGGACTGCTTCGGTATACTTCTCTCCCATGTTGATGAAGAGGAGAAAGATAGTGGAGTGTGTGCCACATGTGTAGTCCGACTGAGAGACGCCTGCGCCTTCAGACACCAAGTGCTGACTTGTGAAGATCTCTTTTTGAGTGCAAAACTAGGAGACAAGGATGAATCAAAAAAACCAATGGATATGGAGCTAAAAACTGAACCAAAAGATGATGATGAGCAGGGTGTTAATTTCCAAGTTCCAAGCTCAGAAAAAGACCATGAGGATACAGCACAATACCAGCCGCCACTTGTTGTTGCAGATGTGAAACCACCAAAAAAGGAGGAAGTGAAACACGATCTGCCGCTTGAGGACTTGCCGAAAGAAATGGAACTTGATGATTTGGATGATGATGACTATGTTGACAATAATTATTCAGACTCTTCGTCGAACTCTGACAAACCTCTAAAGAAGAAGGCAAAAGTCAAAAGTAAAACGgaaaaaaatagtgttaaaaAGAAAGCCAGTAAAAAGtcagaaaagaagaaaaagaaaaGTGCAATAGAAAAAGCGGCAAAAGCTATTGTAAAGAAACCACCACTAGAAAAGAAAAATACTTACGATAGAGACTTAGATTGCATGTCGGAAGAGAACTTGTTCACTATAATACAGTATTCCTATGTTTGTCCTTTCAAAAATAGAAGGAACAACTATTACTGCTTCTATTGTAAAGATTATTTCCCAAAGCCAGAAGATCTGAGGGAGCATACGGCATCACACGACACCAAACCTTTCCAGTTGCTGATGGGATAtaaaaaaatgccaaaaatAGACATCACAAGAATAGATTGTAAGCTCTGTCCAATAAAAATTGATAATTTAGAAGCCTTCAAACAGCACATAGACCAAGATCATGGTAAGAAAATATATTTCGAAGCTCCCGATAAGATGCTCCTATTTAAACTCACATGGAATGATCTAGTCTGTGTCATGTGCAATGATGTCTTTGAAGATTTCAACACGTTGAATGCTCACATGATAGAACATTTCAGCAACTTCACATGCGACATGTGTGGAATGTGTTTCCTGGAGAAACCCAGGCTGGATGCACATCTGAAACGTCACAAGGACGACGAGCGGCACACGTGCGAGATATGTggtaaagttttcaaatcaaacCACTACAAGGATATGCATGTAGATATCGTCCACAAGAAAAAAGCTATTATACGGTGTCCGAAATGTGATGAATGTTTTATGTCTTATGCGTTGAAAAACAAACATCTAACGGAAGCACACGGACAGAAGAGAACATATCCGTGTAATTTGTGCGACAAAGTCTACAACCGACAGAAAACTTTAACAGAGCATCAGAGGAGGAATCATCAGAAGGTTTTGAAACATCAGTGCGAATACTGCGAGCAGAGATTTTATTTGCCCTCTCGTTTGAAAGAACATATAGCGACGCACACAGGAGAAAGGAACTTCAGGTGTGAATACTGTGAGAAGAGTTATCCGAGACTGAAATCGCTGCAATATCACATTAGAACCCACACCAATGACCGTAGATACAGATGTCACATATGTGCACAAGCGTTCATTCAAAACGCAAGTTTAAAATCACACATAAAAAGCCATCACCCAGAGTGTGATATTGAgggattatatttttaa
Protein Sequence: MSLIKSNGPLIDPALCRCCRAIKKCRILTAEYTWMETKEVYADMIMDCFGILLSHVDEEEKDSGVCATCVVRLRDACAFRHQVLTCEDLFLSAKLGDKDESKKPMDMELKTEPKDDDEQGVNFQVPSSEKDHEDTAQYQPPLVVADVKPPKKEEVKHDLPLEDLPKEMELDDLDDDDYVDNNYSDSSSNSDKPLKKKAKVKSKTEKNSVKKKASKKSEKKKKKSAIEKAAKAIVKKPPLEKKNTYDRDLDCMSEENLFTIIQYSYVCPFKNRRNNYYCFYCKDYFPKPEDLREHTASHDTKPFQLLMGYKKMPKIDITRIDCKLCPIKIDNLEAFKQHIDQDHGKKIYFEAPDKMLLFKLTWNDLVCVMCNDVFEDFNTLNAHMIEHFSNFTCDMCGMCFLEKPRLDAHLKRHKDDERHTCEICGKVFKSNHYKDMHVDIVHKKKAIIRCPKCDECFMSYALKNKHLTEAHGQKRTYPCNLCDKVYNRQKTLTEHQRRNHQKVLKHQCEYCEQRFYLPSRLKEHIATHTGERNFRCEYCEKSYPRLKSLQYHIRTHTNDRRYRCHICAQAFIQNASLKSHIKSHHPECDIEGLYF*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00404124;
90% Identity: iTF_01248499;
80% Identity: -