Gale032309.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Glaucopsyche alexis
Gene Symbol
-
Assembly
GCA_905404095.1
Location
FR990061.1:2312393-2318303[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.00015 0.016 16.7 1.0 3 23 251 271 249 271 0.98
2 10 0.00016 0.017 16.7 2.6 1 23 277 299 277 299 0.98
3 10 1.9e-06 0.00021 22.7 1.2 1 20 305 324 305 327 0.92
4 10 0.14 15 7.4 2.7 1 23 333 355 333 355 0.98
5 10 0.00011 0.012 17.2 5.5 1 23 361 383 361 383 0.99
6 10 0.00014 0.015 16.8 0.9 1 23 389 411 389 411 0.96
7 10 8.8e-05 0.0097 17.4 4.1 1 23 417 439 417 439 0.98
8 10 2.4e-06 0.00027 22.4 4.7 1 23 445 467 445 467 0.99
9 10 2.5e-06 0.00028 22.3 0.7 1 23 473 495 473 495 0.98
10 10 1.3e-07 1.4e-05 26.4 3.3 1 23 501 523 501 523 0.99

Sequence Information

Coding Sequence
ATGTGTTACATCTGCCACACGAGACTGCGGCAGTGCCACCAGCTGTGCCTTTTGGTGGAACGGAGTGAGCGCAAATTGCAGACGGCCCTTGTTGATCCTCTTGAGGTGGATGGTAAATCTAAACCTCATAAGTCCCTACTGGAGTTGTCGCAGACAGAGATCGTAACTATGTCAATGTCGGGCGCTGAAGAGGACCAGAGTAAGGTGGATGTAAAACAGGAGGAGAGGTTCTACTTTTATGACAGAGATGTAATGGAGAAAAAAGCAGTACATAATAATCGAGATGATCATTGTGAAGAAAGTGATGAAGATCTCTCCGACTCCAGCTTCGAGTCTGAGCTTGACGATTCAGACGATAATGACATACAATATGTCAAGCAGGAAATTGTCGAGAATAAAGATGAGAAAAATATTGCACAACCTGAAAATTTACAAAAGCAAAACAAGAAAGATGACGACCGTCTTGAAAATGAAACGGCAACCGAAACGAAGTCAGATATGTCAGTCAAAGTGGAGTCTACGGTCGCCAAGAACAGTCTTCCGAACTCGCTCATAAAGGTAGAGGTCGAGAGGCAGCCGGAGATCACTATCGAGTACGAGGGGAGCGCTAGTTCCGATAGCGAGGAGAGCGCTGACGCTGATCTTACGTCCCGCTCGCTCCCCCGGCCCAGGTACACAGCGAGAGCGAGACAGAAGCACGTCTTGAATCCGCGGCCCAAAACAGAATCGATGCAGAACAGACCGTACGGCTGCGACGTCTGTCCGCGCAGGTTCAAACTCAAAACGGGTCTGACGCAGCACAAGAGAACACATACGGGCGACAAACCGTTCTCTTGCGAGTACTGTTCGCGCAAGTTCCTCACCCGGACCAACCTGAAGGTGCACCTCAACACGCACACGGGCGAGAGACCGTTCTCCTGTGACATCTGCCAGCGCAAGTTCTCCAACAGCAGCCAGCTGCGGCGCCACATCCCCCGGCACGCGGACTTCAGGCCGTTCCAGTGCCAGTTCTGCGACCGGCAGTTCCTACTGAAGGATGTGTTCCAGAAGCACGTGAAACGGCATACCGCAGTGGACGTGTTCAGGTGTGACATATGTCAGTGCAAGTACAAGACCCAGCAGTCGCTGAAGGTGCACTACCGCACACACACCGGCGAGAAGCCCTACTGCTGCGACGTGTGCGGGCTCCGGTTCATCGTGAAGAAGCAACTGGAGCGCCACGCGACCGTCCACACTAACCTCAAGCCGTTCTCCTGCCAGATGTGCCCCGCGGCGTTCAAGACCAAGCACTGTCTCCGGGCACACGTGAGGCGGCATACAGGAGACGAGAggTTCACTTGTAACATGTGCCAGCGCCGTTTCGCCCAGAACTGCGATCTGCGGAACCACATGCGAACACACGTGGGCGACAGACCGTTCGCCTGCGACTACTGCCCGAGCAAGTTCTACCAGAGGAGCAGCCTCAACGCGCACATACGGACACACACGGGCGAGAAACCGTACACGTGCGACGTGTGCCAGCGGAAGTTCACCCAGAACAGCAGCCTGACGCGCCACAGGAGAACGCACACCGGCAAAACCGGGTACCTGTGA
Protein Sequence
MCYICHTRLRQCHQLCLLVERSERKLQTALVDPLEVDGKSKPHKSLLELSQTEIVTMSMSGAEEDQSKVDVKQEERFYFYDRDVMEKKAVHNNRDDHCEESDEDLSDSSFESELDDSDDNDIQYVKQEIVENKDEKNIAQPENLQKQNKKDDDRLENETATETKSDMSVKVESTVAKNSLPNSLIKVEVERQPEITIEYEGSASSDSEESADADLTSRSLPRPRYTARARQKHVLNPRPKTESMQNRPYGCDVCPRRFKLKTGLTQHKRTHTGDKPFSCEYCSRKFLTRTNLKVHLNTHTGERPFSCDICQRKFSNSSQLRRHIPRHADFRPFQCQFCDRQFLLKDVFQKHVKRHTAVDVFRCDICQCKYKTQQSLKVHYRTHTGEKPYCCDVCGLRFIVKKQLERHATVHTNLKPFSCQMCPAAFKTKHCLRAHVRRHTGDERFTCNMCQRRFAQNCDLRNHMRTHVGDRPFACDYCPSKFYQRSSLNAHIRTHTGEKPYTCDVCQRKFTQNSSLTRHRRTHTGKTGYL*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01178880;
90% Identity
iTF_01178880;
80% Identity
-