Gale013428.1
Basic Information
- Insect
- Glaucopsyche alexis
- Gene Symbol
- -
- Assembly
- GCA_905404095.1
- Location
- FR990047.1:28133122-28142461[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0083 0.91 11.2 2.1 1 23 159 182 159 182 0.96 2 12 0.00085 0.093 14.4 3.2 1 23 192 214 192 214 0.93 3 12 7.4e-05 0.0081 17.7 3.4 2 23 222 243 221 243 0.97 4 12 0.0081 0.89 11.3 0.2 6 23 253 270 252 270 0.99 5 12 9.7e-05 0.011 17.3 0.0 1 23 279 301 279 301 0.96 6 12 0.0023 0.26 13.0 0.8 5 23 310 328 307 328 0.96 7 12 5e-05 0.0054 18.2 7.1 1 23 334 356 334 356 0.96 8 12 2.1e-06 0.00023 22.6 0.7 1 23 362 384 362 384 0.98 9 12 3.2e-06 0.00036 22.0 1.8 1 23 390 412 390 412 0.99 10 12 0.00034 0.038 15.6 1.4 1 23 418 439 418 439 0.96 11 12 0.004 0.44 12.2 0.1 1 23 445 467 445 467 0.96 12 12 0.00017 0.019 16.5 2.5 1 21 473 493 473 495 0.96
Sequence Information
- Coding Sequence
- atGAATGATAGCAAATCTGATGTAAAAAACCTAAAACCTGTGTTAGATTTAAAAAATGCTTGCCGAGCATGTTTAAGAACAGGGAAAGAAAACATGGACTCACTATTTTCTATGCATAAAAAAGAAATGTTATCAGATATGTTTGTAAACATAACTTCTCTTAaaATTGAGCCTGAGGAAAATCTACCTCTGCAAGTGTGTAGTTCATGCCGTCAACAACTTATAAAATCATATAAGTTTAGATTAAAATGCAGGGAATCTGATAGTTATGTAAGGTCTTTTATTGATTCGGAGAAGAATTTAATAGATTCTTCACAGCCAAGGTTGGACTCATCAAGCAATagtataaattgtaaaaataatgaCGAAAAAGAAAAGGATGAATGTAAAGATGAAATAAAGTTAGAGGATCAAGAAGAAACAAGCAAACATGAGAAAaagtcaaacaaaacaaaagctGCCAAAAATGAGATGTTTGAATGTGAAGTTTGTTTCAAGaaatttaaaaaaataatgatgcTGAATGTCCACTTCAACAAATACCACATGCAGAAGGAGGACACAGATCTGTTATTTCGCTGCGAGCACTGCAAAGAATCCTTCAATTCTGAGCATGATCTGCAGCTACACTCCGCTCTACACACACCGGTTGACAATACGTGGACTTGTAACAAGTGCCACAAATTATTTAAAGTGCGCAGCGCGTTACGTCGCCACGTGCGCTACCACATGGAACACAAGCGGCACGCGTGCGCGTGCGGCAAGACGTTCGCGGAGCGGTGCGCGCTGCTGCGCCACGCGCGCGTGCACACGGGCCAGCACGCGAGCAAGAACTTCGCCTGCGAGTACTGCGATAAGAGgttcatAGACCGCGCGGCGCTGGGTGCGCACGTGGCGCGGCACACGGGCGAGCGCGCGCACGCGTGCGACTGCGGCGCGGCGTTCCGCTCGGCGCGCCTGCTGCGCTCGCACCGCCGCGTGCACGACGAAAGCCGCCCGCACGCCTGCACCGTCTGCCACAAGCGTTTCCGTCACGCGTCTACGCTGCGCACACACGCGCGCACGCACTCGGGCGAGCGGCCGTACGTGTGCGCGGCGTGCGGCAAGAGCTTCATACAGCACTCCAACCTCACGCTGCACGCGCGCACCCATACcgGTGAGAAACCTTACAGCTGTGATTTTTGCGGGCGGAAGTTCACGTCGGGGTCTTCGCTGAGCTCCCACCAGCGCACGCACACCGGCGAGAAGCCCTACTGCTGCCCCATCTGTGGCAAAAGATTCGCTCGTATGGACATGACGGCGCACATGCGGCAGCACTCCGGCGAGCGACCGTACGCGTGCGCGGCGTGCGGCAAGCGCTTCGCCACAGCCGCGCGACGCACTCAGCATATGCTCGTGCACACGGCCGAAAATCCATACGAGTGCGGCGTGTGTTCCGAGAAGTTCAAACGGAGAGCGTACCTCGCTCGGCACATGAAATGCCACAAGGGAGAGAAGATCAAGAGCAATCGAGTGTCGGTATTACAAATGGCGCCTCCTCGGGAGAACGTTATTGTAACTAACTACTCAACGAAAACTGCTGAGCCAGTTACGAGTGGTGACAGGTGCGAAGCCATGTCCGAGTACCACCAAGACTTGCCTTTAGGTGTATCGCAGGAGTTAATCCTAGATGACAGTGATGTTAAAAACGAGGAGGTAGTCATTGATGAGGACTCACACAGTATCGCATATCAGACGGAAGAGATATGTTTGGATTCACAGGAAATACAATACGATCAAATGGAACTAGTGAATGTAGAAAACATAGAATCGAAAATAAACGATGTCGGTATGAATTTGTATGGAGATCAAGGTTATATGAAAATAGAAACGGTAGATGGTCAGTTAATGATAAGCAAAATAACTAGCGGATAA
- Protein Sequence
- MNDSKSDVKNLKPVLDLKNACRACLRTGKENMDSLFSMHKKEMLSDMFVNITSLKIEPEENLPLQVCSSCRQQLIKSYKFRLKCRESDSYVRSFIDSEKNLIDSSQPRLDSSSNSINCKNNDEKEKDECKDEIKLEDQEETSKHEKKSNKTKAAKNEMFECEVCFKKFKKIMMLNVHFNKYHMQKEDTDLLFRCEHCKESFNSEHDLQLHSALHTPVDNTWTCNKCHKLFKVRSALRRHVRYHMEHKRHACACGKTFAERCALLRHARVHTGQHASKNFACEYCDKRFIDRAALGAHVARHTGERAHACDCGAAFRSARLLRSHRRVHDESRPHACTVCHKRFRHASTLRTHARTHSGERPYVCAACGKSFIQHSNLTLHARTHTGEKPYSCDFCGRKFTSGSSLSSHQRTHTGEKPYCCPICGKRFARMDMTAHMRQHSGERPYACAACGKRFATAARRTQHMLVHTAENPYECGVCSEKFKRRAYLARHMKCHKGEKIKSNRVSVLQMAPPRENVIVTNYSTKTAEPVTSGDRCEAMSEYHQDLPLGVSQELILDDSDVKNEEVVIDEDSHSIAYQTEEICLDSQEIQYDQMELVNVENIESKINDVGMNLYGDQGYMKIETVDGQLMISKITSG*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01178870;
- 90% Identity
- iTF_01178870;
- 80% Identity
- -