Basic Information

Insect: Glaucopsyche alexis
Gene Symbol: -
Assembly: GCA_905404095.1
Location: FR990061.1:21992579-22000913[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00014 0.015 16.9 5.6 1 23 138 160 138 160 0.98

2 12 8.5e-05 0.0093 17.5 0.0 2 23 182 203 181 203 0.97

3 12 1.1e-06 0.00012 23.4 4.2 1 23 209 231 209 231 0.98

4 12 0.086 9.4 8.0 3.0 1 21 237 257 237 258 0.94

5 12 0.00043 0.047 15.3 0.6 1 23 267 290 267 290 0.90

6 12 0.00098 0.11 14.2 2.5 1 23 331 354 331 354 0.92

7 12 4.1e-05 0.0045 18.5 3.6 1 23 359 381 359 381 0.99

8 12 0.00013 0.015 16.9 6.4 1 23 387 409 387 409 0.98

9 12 0.0067 0.74 11.5 0.1 1 23 415 437 415 437 0.97

10 12 5.5e-07 6e-05 24.4 4.4 1 23 443 465 443 465 0.98

11 12 1.2e-06 0.00013 23.3 1.3 1 23 471 493 471 493 0.99

12 12 0.00036 0.04 15.5 1.2 1 23 499 521 499 521 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00014	0.015	16.9	5.6	1	23	138	160	138	160	0.98
2	12	8.5e-05	0.0093	17.5	0.0	2	23	182	203	181	203	0.97
3	12	1.1e-06	0.00012	23.4	4.2	1	23	209	231	209	231	0.98
4	12	0.086	9.4	8.0	3.0	1	21	237	257	237	258	0.94
5	12	0.00043	0.047	15.3	0.6	1	23	267	290	267	290	0.90
6	12	0.00098	0.11	14.2	2.5	1	23	331	354	331	354	0.92
7	12	4.1e-05	0.0045	18.5	3.6	1	23	359	381	359	381	0.99
8	12	0.00013	0.015	16.9	6.4	1	23	387	409	387	409	0.98
9	12	0.0067	0.74	11.5	0.1	1	23	415	437	415	437	0.97
10	12	5.5e-07	6e-05	24.4	4.4	1	23	443	465	443	465	0.98
11	12	1.2e-06	0.00013	23.3	1.3	1	23	471	493	471	493	0.99
12	12	0.00036	0.04	15.5	1.2	1	23	499	521	499	521	0.95

Sequence Information

Coding Sequence: ATGGGGCTGGTGAATTTGTCCCGCTCCACCACCGCACACTTTACGGTGCCCAACCCCACCAACTCCAACAGCGTCGTAGAAGTTCTGGTCAAAAAGGAACCCTTGTCTACTTTAGGGGATCTGGCTTTTGATGATGAAGgTTTGGAGCAATATGAAGACATGGATAACACAGAGGATTGGCATTCAGATGATAATAAAGAATATACTAAAGAAGAGAACTTTGAGAATGATAACTCGAATACAGATCTCAAAGACGTGCCCTGTTTTAAGAATAAAGTAGAAATTGAAATAAACACACACAGCGGTACAAATGATGTGGCAATTAAAGAAGAAATTGTTGATAAAATAAAAGAGGAAATCGTGGAAGGTGACAACCTCCTCAACATTGCGACCGCCCCAGATAACTTAATATACACTTGTCACATCTGCAGTCACATGTTCAGTTCCATGAGCTTGTTAAGGAAACATAAAATAACTCACAatactattaataaaaatagcagatcaaagttaaaatataaatcatgCACAGGAAAAAAGGTCGTTTGTCCCGTATGTGGTAAGTACTACGCAGACAGGCGAGTACTGGCGAGACACCAGAAAATACACTTAGCGGTCCGACCCTTCAGCTGTGAGATCTGTAACAAGACCTTCTCCAGGAGGGACCACTACAACAAACACGCGCAAACCCACCCCGGACTCCATCTGTACACGTGCCAAAACTGTAAGTCACATTTTGCGAACACTGTACAGTTGAAGGTGCACGAGTGTACCCCGCGGGAGTACGACCCGGCATCCTTCTCCTGTGATATTTGCGACGAGCGCTTCGATCGCTGGGACCTGTACCACGCGCACAAGACCGACGCCCACGGAATTTCGCTGTTTCCCGAAATCACCATTCAAAAAGTGAGTACGAAGGAACATGACGATTCTCAAGTAACTCCAACTCCCATCGACAGCTCCAATACTAAgcagaaaaaaaagaaaaagcatTCGTGTGACACGTGCAACACACACTACAGCAACCAGTACCAACTGGAGACTCACGTGCTGGCGGAGCACAAGAACGCCCGCTACGAGTGCGACCACTGCGACAAGGTGTTCCTGCGGCGCAGCGGCCTGTGCCTGCACTTGCGCATGCACAAGGGCGAGCGCCGCTACTGCTGCGACGTCTGCGGCAAGACCTTCACGTACAAGAGCAGCCTCAACTGCCACCGGCGCGTGCACACCGGCGCCAAGCCCTACTCCTGCGACCTCTGCAGCAGGAAGTTCGCCGCCTACGGGCAGCTGGCCGAGCACAAGCTGGTGCACACCGACGTGCGACCGTACTCGTGCGAGGTCTGCAGCAAGGCTTTCAAACGGAGACGGCACCTGAAGAAGCACATGATGTCCCACACGGGCGAGAAGCCGTACACGTGCGACGTCTGTTTCAAGAGCTTTGCCCGGAACGACAACTACACCATACACCGGCGGATACACACCGGCGAGAAACCCTTCGTGTGCGACGTGTGCGGCGACACCTTCAGTGAGAATCGCCACTTGAAAAAACATAAAGTAATCCACGAGTGA
Protein Sequence: MGLVNLSRSTTAHFTVPNPTNSNSVVEVLVKKEPLSTLGDLAFDDEGLEQYEDMDNTEDWHSDDNKEYTKEENFENDNSNTDLKDVPCFKNKVEIEINTHSGTNDVAIKEEIVDKIKEEIVEGDNLLNIATAPDNLIYTCHICSHMFSSMSLLRKHKITHNTINKNSRSKLKYKSCTGKKVVCPVCGKYYADRRVLARHQKIHLAVRPFSCEICNKTFSRRDHYNKHAQTHPGLHLYTCQNCKSHFANTVQLKVHECTPREYDPASFSCDICDERFDRWDLYHAHKTDAHGISLFPEITIQKVSTKEHDDSQVTPTPIDSSNTKQKKKKKHSCDTCNTHYSNQYQLETHVLAEHKNARYECDHCDKVFLRRSGLCLHLRMHKGERRYCCDVCGKTFTYKSSLNCHRRVHTGAKPYSCDLCSRKFAAYGQLAEHKLVHTDVRPYSCEVCSKAFKRRRHLKKHMMSHTGEKPYTCDVCFKSFARNDNYTIHRRIHTGEKPFVCDVCGDTFSENRHLKKHKVIHE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01178867;
90% Identity: -
80% Identity: -