Basic Information

Insect: Glaucopsyche alexis
Gene Symbol: -
Assembly: GCA_905404095.1
Location: FR990048.1:23434897-23440226[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 8.4e-07 9.2e-05 23.8 0.5 1 23 75 97 75 97 0.99

2 14 0.0059 0.65 11.7 2.4 1 23 103 126 103 126 0.94

3 14 4.4e-06 0.00048 21.5 0.5 1 23 132 154 132 154 0.98

4 14 0.0013 0.14 13.8 2.8 1 23 160 182 160 182 0.97

5 14 8.6e-06 0.00095 20.6 1.8 1 23 188 210 188 210 0.98

6 14 0.00015 0.017 16.7 1.3 1 23 216 239 216 239 0.96

7 14 2.1e-06 0.00023 22.6 3.3 1 23 245 267 245 267 0.97

8 14 2.3e-05 0.0025 19.3 0.7 1 23 273 295 273 295 0.99

9 14 3.5e-05 0.0038 18.7 0.8 1 23 301 323 301 323 0.99

10 14 2.4e-08 2.6e-06 28.7 1.0 1 23 329 351 329 351 0.98

11 14 8.6e-08 9.4e-06 26.9 1.3 1 23 357 379 357 379 0.98

12 14 0.049 5.3 8.8 2.1 1 23 385 404 385 404 0.96

13 14 1.5e-06 0.00017 23.0 0.7 1 23 410 432 410 432 0.98

14 14 0.00028 0.031 15.9 4.0 1 23 438 460 438 460 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	8.4e-07	9.2e-05	23.8	0.5	1	23	75	97	75	97	0.99
2	14	0.0059	0.65	11.7	2.4	1	23	103	126	103	126	0.94
3	14	4.4e-06	0.00048	21.5	0.5	1	23	132	154	132	154	0.98
4	14	0.0013	0.14	13.8	2.8	1	23	160	182	160	182	0.97
5	14	8.6e-06	0.00095	20.6	1.8	1	23	188	210	188	210	0.98
6	14	0.00015	0.017	16.7	1.3	1	23	216	239	216	239	0.96
7	14	2.1e-06	0.00023	22.6	3.3	1	23	245	267	245	267	0.97
8	14	2.3e-05	0.0025	19.3	0.7	1	23	273	295	273	295	0.99
9	14	3.5e-05	0.0038	18.7	0.8	1	23	301	323	301	323	0.99
10	14	2.4e-08	2.6e-06	28.7	1.0	1	23	329	351	329	351	0.98
11	14	8.6e-08	9.4e-06	26.9	1.3	1	23	357	379	357	379	0.98
12	14	0.049	5.3	8.8	2.1	1	23	385	404	385	404	0.96
13	14	1.5e-06	0.00017	23.0	0.7	1	23	410	432	410	432	0.98
14	14	0.00028	0.031	15.9	4.0	1	23	438	460	438	460	0.98

Sequence Information

Coding Sequence: ATGGCGGCTTGTGGCTTATCTAGTTCACAGACTTACCGTAAGAGGGAGCTGCGCAGGGAGCTGATCTGTGACGAAAACGGTGCATCACAAATAGGATTTGAGTTAGATGTTGATGACCAGCCCCTATCAAAGCTGAAATGTTTTGAAGTAGATGAAGCATGGTCGAATGAACCCTTAGGAAATGACGatGAAGACACAAAGCCAAAACAAAGAGACAAAAAATATACTTGTACAATATGCAATAGAAAATTTTCGTATCTCGGCTCCCTTGAAGTTCACATGCAAATACATTCTGGGCAGAAAGACCATCACTGTGTCCTCTGCGACAGTAAGTTTATTTCGAATAAAGAGTTGATAAAACACATACAAGAAAGCCACTGCGTTGGCGACAAATTTCCGTGTACAATATGCAAGAAGGCTTTTGGAAAGCCGAGACTCTTGAAAAATCATTTAAATACACACATTGTAGtacaaaaatttaaatgtataCAATGCGATAAAGAATATCAAAAGAGAAAAAGTCTGAGAGAGCACATGAAAACTCATTCTAAAGAAAAGAAGTATATTTGTACGATTTGTAATAAATCCTTTGGCCATAATCAAACATTAAAATCACATCTATTGATTCACACAGGTGAGAGACCTTATATCTGTGATATTTGTGGTAGGAGGTTTCTACAGCGCACACATATGAAAAGGCACATTTCGATAATACACACAGGCGCGAAACCCCACTCTTGCAACGTGTGCAACAAAAGCTTCTCCACCAAAAGTTATTTGATGATTCATGAACGTCAACACACAGGGGAAAGACCTTACACATGTGAGGTTTGCAAAGAAAATTTTACAGCGTATACCACACTAAAGGTGCATATGAGAATACACACGGGCTCGAAACCGTACGAGTGCTCGTACTGCGATCGTCAGTTCGCGCAAATTGCTAGTTTTAAACTGCACGAAAGAACACATACAGGAGAACGACCGTACAGTTGCACGATTTGCAAGAAATCGTTTTCGGACAATGGCTATCTAAAAATCCATATGCGCGTACACTCTGGTGAAAAGCCATTCAGCTGTGAAATATGCAAACGTTCGTTCAGAGAGAATGGCCAGTTGAAACGACACATGCGCGTGCACACCGGCATCAAACCTTACACGTGTAAAGTATGCAACAAACAGGTCGGCAACCTCAGCAAACACATGAAAGTGCACACCGAGGACAGACCGTACAACTGTAGCGTGTGCAATAAACAGTTCTCTATCAACGGTAACCTTAAGCTGCATATGCGAATACATACAGGCGAAAGACCCTTCACTTGCGACCAGTGTAACAGTCAATTCGCACAAAGTAGTGGCCTCAAGCGACATAAATGTACTCATGGTAAAAATGATACTTAG
Protein Sequence: MAACGLSSSQTYRKRELRRELICDENGASQIGFELDVDDQPLSKLKCFEVDEAWSNEPLGNDDEDTKPKQRDKKYTCTICNRKFSYLGSLEVHMQIHSGQKDHHCVLCDSKFISNKELIKHIQESHCVGDKFPCTICKKAFGKPRLLKNHLNTHIVVQKFKCIQCDKEYQKRKSLREHMKTHSKEKKYICTICNKSFGHNQTLKSHLLIHTGERPYICDICGRRFLQRTHMKRHISIIHTGAKPHSCNVCNKSFSTKSYLMIHERQHTGERPYTCEVCKENFTAYTTLKVHMRIHTGSKPYECSYCDRQFAQIASFKLHERTHTGERPYSCTICKKSFSDNGYLKIHMRVHSGEKPFSCEICKRSFRENGQLKRHMRVHTGIKPYTCKVCNKQVGNLSKHMKVHTEDRPYNCSVCNKQFSINGNLKLHMRIHTGERPFTCDQCNSQFAQSSGLKRHKCTHGKNDT*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01178858; iTF_00404024; iTF_00934044; iTF_00164574; iTF_01248392;
90% Identity: iTF_01178858;
80% Identity: -