Gale031213.2
Basic Information
- Insect
- Glaucopsyche alexis
- Gene Symbol
- PRDM5
- Assembly
- GCA_905404095.1
- Location
- FR990060.1:4720229-4730484[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00046 0.051 15.2 4.5 1 23 168 190 168 190 0.96 2 18 0.0023 0.26 13.0 0.8 1 20 214 233 214 235 0.92 3 18 0.0035 0.39 12.4 1.5 2 21 288 307 287 308 0.93 4 18 2e-05 0.0022 19.5 2.2 3 23 341 361 339 361 0.97 5 18 5.1e-06 0.00056 21.3 1.2 3 23 370 391 368 391 0.92 6 18 3.1e-05 0.0034 18.9 5.3 1 23 417 439 417 439 0.98 7 18 7e-05 0.0077 17.8 1.1 1 23 495 517 495 517 0.98 8 18 4.9e-05 0.0053 18.3 0.4 2 20 525 543 524 545 0.94 9 18 4.1e-05 0.0045 18.5 3.3 1 23 573 595 573 595 0.98 10 18 0.00039 0.043 15.4 4.4 2 23 603 624 602 624 0.96 11 18 0.00014 0.016 16.8 0.9 1 23 630 652 630 652 0.97 12 18 2.7e-05 0.0029 19.1 0.2 2 23 657 678 656 678 0.97 13 18 2.9e-06 0.00032 22.1 2.5 1 23 684 706 684 706 0.96 14 18 5.9e-05 0.0064 18.0 0.3 1 23 712 734 712 734 0.97 15 18 0.0011 0.12 14.1 6.9 1 23 740 762 740 762 0.97 16 18 1.9e-06 0.00021 22.7 2.5 1 23 768 790 768 790 0.99 17 18 1.8e-05 0.002 19.6 0.3 1 23 796 818 796 818 0.98 18 18 0.00022 0.025 16.2 3.5 1 23 824 846 824 846 0.98
Sequence Information
- Coding Sequence
- ATGGATATGCTAGGTATTGTAAACCAGCGGAATGTGTATGACCGCTGTAGAACATGTGTGACAACAATTGGAAACGCTTCGTTTAATATTTTCGAGCACAACATACAAAATATCAGCATAGCTGAAATTCTTCACTCGTTTACTGCCATAACTTTTAATGAGAACGACACACTACCAAAAGTTGTCTGCCAACAGTGTTATGAGAAGCtcaacagtttttatgaatttataataaatatagaaAATGTTGATACAAAATTCAAAGAAGTGCATAAAGAAGAAGGTCATTTACCTTTTGAAAGAGAcctcaaaaataattttgattttcAAGAAGTAACTGTAGAATATACATTGCAAGGAAATGAAGGTCGTTTTATTAAAGAAGAAAATTCTGAAGAAGAAAATAGTGCATTATGTACTGAAGATAACATTTTTGTAGGCTCAGGTGACAAGGTAGAATTAATTAGTCCTTGCTCATTAAAATATGAAACAGAACAAGAATATCTATGTAAATTATGTAACAAAAATTTTAGAAATGAGAAAAACTACCAAAGACATAATaagaaacatttaaattttacaataaacaatagtAATTTATCAAAAggagaaataaaaattgtaatcaGCGATGAAGGCTTTATTTGTGAACATTGTAAATACAGTTTCAATAGTGAAGATGCACTTTCCACCCATTTCGAAAcatgtacaaataaaataacaagTTACAAGAACTATTCTCATCTGGATAACTTATATGACTATAAGACTGATTctaatgaaatagaaattaaTCCTCCAGAACACAACAAAAATTCGGAGCAAATTGATCCCGAAGAAATTAAAGAAGAAAACGAAATAAAATGTCACAACTGTTCTTTAGTATTTAAATCACAAAGATCTTTATCAGTACATAAGCAAAGGAATGAAGATTGCAATGAATCAAATTTTATAAACTATCAGAATGAATATACAGAGGAGAACCATTTAGAAACCACAGAAAAGGAAGGTCTAATTGCTTGTGAAATTTGTCACAGGCAATTCAGGAATAAGTATTCAATGTCTGCACATATGCGGAAACATGTTGAAAAGGGTAGAATATTAGCATGTCCGACGTGCGGCAAAGTATTCACTAAAGCCAACCATTTGAAACGACACCAGTTTTTGTTACACAGAGATTGTTACGCAAGTACACATTTTCAAAGCAAAGACACAAAAGACATTTCGACTGCTACTGAAGAAGGtgaatttatttgtaaaatttgtaaaagGAGATTCAAATCTAAACATTCAATGTCTGCGCATATGCGGAAACATGTTGAAAAGAGTAGAACACTTTCAACAAGCAGCGGAATATTTAGTAAAGTTAACCATTTGTCACCACACCAGCTTTTGTTGCTTAAAGATTGTAACGAGTCAAAAACAAATTGTCAAACCAAAGAAGCCAATGACAATATTTTAACTGGTACCGAGGAAGGTGAATTTATTTGTGACATTTGTAAAATTAGATTCAATAATAGATATTCAATGTCTGCGCATATGCAAAAACACGTTGAAAAGGGGAGAGTACTATCATGTTCTACATGCGGCAAAGTATTCAGTAAAGTCAGCTATTTAAAACGACACCAGGGCAATTGTCCAAGTGAAGAAGGAGAGAGTACAAATTGTCAAAGTGAAGATGCAAAAGAGATTTCAACTGGTACTGAGGAAGGTGAATATATTTGTGAAATTTGTCGAAAAGGATTCAAAAAGAAACATTCAATGTCCGCGCATATGCGGAAACATGTAGAAAAGGGAAGGGTGCTATCGTGTTCAACGTGCGGCAAAGTGTGTAGGAAAGTCAGCCATTTGAAACGACACGAAATAACGCATGAAGATAAACGTCATTTTAAGTGTGGAATATGTAAGAAACCTTATTCCACCGAAGAACTCTTGCAACAGCATTCAAAACAGCACAAAGACGCCAAAACGTGTCCAGTATGTCAGAAAGCGTTTACCAATATGCCTGCACTCAATACACACATAAAAGTACATACTCGTAGTAAACTGTATCTGTGCTCATACTGTGGCAAGAGATTTGATTCTAGTACAAATTTAAATCAACACTACAAAAGGCATATAGGTATCAAAACTTTTGCCTGTTCTCTTTGTCCAAGAAAATTTGTTACCAAGGGAGAACTAACGTCACACGCCTCAACTCACACTGGGGAGAAGCCACACAAGTGCAAACAATGTAATGCGTCGTTCACCAAGAACAGCTCGTTAGTCAAGCACACTCATAGACATCTGGGCATCAAGCCATACCAGTGCGATAAATGTTCCAAGAAGTTTACAACCAACGGTTCTCTAAAACTTCACTACCGCATCCACACGGGCGAGAAGCCGTACTCCTGCGACATATGTGCCCGGGCGTTCGCGCAGAGCAACGACTTGGTCAAACACCGAAGGCGGCATCTTGGAGAGAAGTTGTACAAATGTGAACAATGCACCGAAAGTTTTCGTCTCAAGACCGAGTTAAAGCATCACATTTCCCAGCATTACATCACTCAACTTCAAGAAACTAACATGGCAGCAAAGCATATTGATATCatagaaattaatattatgGAAGAGAAGAGTAGTACTTAG
- Protein Sequence
- MDMLGIVNQRNVYDRCRTCVTTIGNASFNIFEHNIQNISIAEILHSFTAITFNENDTLPKVVCQQCYEKLNSFYEFIINIENVDTKFKEVHKEEGHLPFERDLKNNFDFQEVTVEYTLQGNEGRFIKEENSEEENSALCTEDNIFVGSGDKVELISPCSLKYETEQEYLCKLCNKNFRNEKNYQRHNKKHLNFTINNSNLSKGEIKIVISDEGFICEHCKYSFNSEDALSTHFETCTNKITSYKNYSHLDNLYDYKTDSNEIEINPPEHNKNSEQIDPEEIKEENEIKCHNCSLVFKSQRSLSVHKQRNEDCNESNFINYQNEYTEENHLETTEKEGLIACEICHRQFRNKYSMSAHMRKHVEKGRILACPTCGKVFTKANHLKRHQFLLHRDCYASTHFQSKDTKDISTATEEGEFICKICKRRFKSKHSMSAHMRKHVEKSRTLSTSSGIFSKVNHLSPHQLLLLKDCNESKTNCQTKEANDNILTGTEEGEFICDICKIRFNNRYSMSAHMQKHVEKGRVLSCSTCGKVFSKVSYLKRHQGNCPSEEGESTNCQSEDAKEISTGTEEGEYICEICRKGFKKKHSMSAHMRKHVEKGRVLSCSTCGKVCRKVSHLKRHEITHEDKRHFKCGICKKPYSTEELLQQHSKQHKDAKTCPVCQKAFTNMPALNTHIKVHTRSKLYLCSYCGKRFDSSTNLNQHYKRHIGIKTFACSLCPRKFVTKGELTSHASTHTGEKPHKCKQCNASFTKNSSLVKHTHRHLGIKPYQCDKCSKKFTTNGSLKLHYRIHTGEKPYSCDICARAFAQSNDLVKHRRRHLGEKLYKCEQCTESFRLKTELKHHISQHYITQLQETNMAAKHIDIIEINIMEEKSST*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -