Gale035651.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Glaucopsyche alexis
Gene Symbol
ZIPIC
Assembly
GCA_905404095.1
Location
FR990063.1:14924669-14939385[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 4.8 5.3e+02 2.5 0.9 3 17 2 16 1 17 0.91
2 18 3.2e-06 0.00035 22.0 1.9 1 23 275 297 275 297 0.97
3 18 0.0011 0.12 14.0 3.3 1 23 305 327 305 327 0.97
4 18 4.1e-05 0.0045 18.5 2.6 1 23 333 355 333 355 0.94
5 18 2.8e-06 0.00031 22.2 0.5 1 23 360 382 360 382 0.98
6 18 7.2e-07 7.9e-05 24.0 1.1 1 23 388 410 388 410 0.98
7 18 2.9e-05 0.0032 19.0 4.8 1 23 415 437 415 437 0.98
8 18 3.9e-05 0.0042 18.6 3.4 1 23 443 465 443 465 0.98
9 18 4e-06 0.00044 21.7 0.7 3 23 473 493 472 493 0.99
10 18 7.8e-05 0.0085 17.6 0.7 1 23 499 521 499 521 0.99
11 18 0.0025 0.27 12.9 0.2 1 23 527 549 527 549 0.97
12 18 4.4e-07 4.9e-05 24.7 1.5 1 23 555 577 555 577 0.99
13 18 2.8e-05 0.0031 19.0 3.9 1 23 583 606 583 606 0.96
14 18 1.5e-05 0.0016 19.9 2.7 1 23 612 634 612 634 0.98
15 18 0.00025 0.028 16.0 3.4 1 23 640 662 640 662 0.97
16 18 2.8e-06 0.00031 22.1 1.9 1 23 668 690 668 690 0.99
17 18 4.3e-05 0.0047 18.4 3.4 1 23 696 718 696 718 0.98
18 18 0.0052 0.57 11.9 6.2 1 22 724 745 724 745 0.96

Sequence Information

Coding Sequence
ATGTGTTACATTTGCCACACGAGACTGCGGCAATGTCACCAGCTGCAGCAGCTGGCCGTACAGACACAAGGTCTCATAGATGATATATTCCAGAATAAGATCGAGAATTACGGATCTTTTAAATCAATTCTAGAATTATCAACTTCCCAGACGAAGATAATTTCCACAACACCCCCCTGTTCATATATCAAACAAGAGTCAGAAGAAGAGAAGGGAGCTTACAACGACGACGGCACTGAACAAgatgaaattttggaaaatacaAATGACTATGAAGTAAAGAAAGAACCTTCCCTTGAAACCGAAGATCCTCTTGCAACACAGGTGTTGTCGAATGTGGACAACATTGAAGCACATCAGAAGGCAAAGGTTCCTAAATTAATAATAGTCCAGTTAAGTCAAAGCGTTATAGGCAGATATGTTCGCCAAAGTCCCACAACACACCCGGTCACAGAAGTAAATCCGGAGGACAGggaagaaaaaatatttgttgaACAGAGCACGGAACATCCGGAAATAAATGAAGAGATAGAAGAGGAGATGAAAGATAAAGGTATCGAACAAGACGACGATCAAGACAACACAAATGACTGCGAGGGGCGAGACCATGCCGGTGAAGCTCAGTCCGGCTGTTACATGGGACCGCTCAGCTGCGATaCTGAACCTATGCTGATCTCGCAATGGTTGTCAACGAATGATGACATAACGTGTATTGAACCTGAGTATCAGATTGTCAAACAAGAGGAGTCTGTGGATAGTTTATGCTATAATACTACACCCGACAACGAGAAATCGTTAGATAAAACTTTAACACCAGTGAAGTTTGCTTGTGATGTTTGCAAAAAGGagtttagtaaaaaatattacttgAGAAGACACATGACAATACATGACAATACCGGTGAAAAACCTTTTAACTGTCATGTTTGCGGTAAGAAATTTCTGCAGATGAGTAGTTTGAATATTCATAAACGACAACATACAGGCGAGAGACCTTACAATTGTAAGTTGTGTGATAAAACGTTTGCTCGTAATTACTGTTTGAAAATACATCAAGTGGCCCACGGCGAGAAGAAGTACACTTGTGACATATGTAGCAAGAGATTCAAACAGGAAAAGACTCTGGTCGCCCACATAAGGGGTCATACAGGTGAAAGACCCTACAGCTGTGGCGTGTGTGACAAAAGTTACTCTCAGAAGAGCAGTCTCAAGGCACACGAGAAGAAACACACTCGCAACAATCACAGTTGCGATATATGTAACAAAGTATTCACGCATAGCAAAAGTCTGGATGTCCATAAAAGGACGCATTTGGGTGATAAACCGTACAGCTGCACGATTTGCGACATGACATTCCGCCACAGCACTTCACTGAAATTGCACACCATGAACCACAGCGGCGAGAAACCGCACGGCTGTGACGTATGCGATAAGAGATTCACTCAGAAATCAGCTCTGAACGATCACAAGATGACACATACGGGCGAGAAACCCTACACGTGTGATATATGTGGCAACAGCTACAGCGGACGGCGGTATTTGAAGATACACAAGAGAATCCATACGGGCGAGAAACCGTACAGGTGTGATGTGTGCGATCGACGGTTTAGCATGATCGGCATACTCAAGGAGCACATGGTCACGCATACCCGGGAAAAGCTGTACAGCTGTAGTGTCTGTGGCAAGAAGTTCTctcagaaaaaaaatgtaagggcACACGAGCGAACACATAGCGGCGCTAAACCATACACCTGTGAGATATGCCACCGGTCCTTCTCGCACAAGAACGGACTGCGTGCACACAAACAAAACATCCACAGCGCGGAAAGGCCGCACACGTGTGCTGTATGCAACAAACAGTTCAAGCAGCTCAGCGATCTGAAGACCCATGGGCGAACACATACTGGCGAGAGACCGTATGCCTGCGAAATTTGTGATAAAAAGTTCAAAAAAGTCAGCACGCTGCACAGTCATAAAACCACACACACAAACGATAGACCGTTCCAATGCGAGTTGTGTAACAAACGGTTCAGCCGACGGGGTTCCTTGGTGCAACACAACAGGACTCATACTGGCGAGAAGCCATACTCGTGTGATATATGCCAGCAAAAGTTCGCCCAGAACTACTCGCTGCATAGCCACAGAAGAATGCATACGGGCGTCAAACCGCACACCTGTGAAATATGTTGTAAATCGTTTAATCAGAAAAGCTCGTTTAACAGGCATAGAAAGACGCAAATTTGTAATAAGGGATtggattga
Protein Sequence
MCYICHTRLRQCHQLQQLAVQTQGLIDDIFQNKIENYGSFKSILELSTSQTKIISTTPPCSYIKQESEEEKGAYNDDGTEQDEILENTNDYEVKKEPSLETEDPLATQVLSNVDNIEAHQKAKVPKLIIVQLSQSVIGRYVRQSPTTHPVTEVNPEDREEKIFVEQSTEHPEINEEIEEEMKDKGIEQDDDQDNTNDCEGRDHAGEAQSGCYMGPLSCDTEPMLISQWLSTNDDITCIEPEYQIVKQEESVDSLCYNTTPDNEKSLDKTLTPVKFACDVCKKEFSKKYYLRRHMTIHDNTGEKPFNCHVCGKKFLQMSSLNIHKRQHTGERPYNCKLCDKTFARNYCLKIHQVAHGEKKYTCDICSKRFKQEKTLVAHIRGHTGERPYSCGVCDKSYSQKSSLKAHEKKHTRNNHSCDICNKVFTHSKSLDVHKRTHLGDKPYSCTICDMTFRHSTSLKLHTMNHSGEKPHGCDVCDKRFTQKSALNDHKMTHTGEKPYTCDICGNSYSGRRYLKIHKRIHTGEKPYRCDVCDRRFSMIGILKEHMVTHTREKLYSCSVCGKKFSQKKNVRAHERTHSGAKPYTCEICHRSFSHKNGLRAHKQNIHSAERPHTCAVCNKQFKQLSDLKTHGRTHTGERPYACEICDKKFKKVSTLHSHKTTHTNDRPFQCELCNKRFSRRGSLVQHNRTHTGEKPYSCDICQQKFAQNYSLHSHRRMHTGVKPHTCEICCKSFNQKSSFNRHRKTQICNKGLD*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-