Gale002272.1
Basic Information
- Insect
- Glaucopsyche alexis
- Gene Symbol
- -
- Assembly
- GCA_905404095.1
- Location
- FR990042.1:43023236-43028665[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.1 65 4.5 0.0 18 40 70 92 70 95 0.82 2 2 3.1e-07 0.0002 22.2 0.1 4 42 261 298 258 300 0.91
Sequence Information
- Coding Sequence
- ATGTTTACGAACCGCGAATATTACGAGATGGTGCGTAGTTACTTTGTAAGTGGGGAAAACACAGTTGCAGCTCGGCGGCTATACGCTGAAGAAAACCACGGACAGTTCACTGCACCAGCGCACGCTCAAGGCGGAGGAGGGAGACCTCCCTTGGCAGTGGAGATCGAGGAAATGATATTCGCGTTCTTCGAGGAAGACCCCAGGAGGAGCACCAACGACGCGGCACGGCGCTTCGGCGTTAGTCAGTACGTGGTATGGAAATTATTAAATACGGCAGGCATGCATCCATACCACTACCAACCTGTCCAAGCATTTCACGCCGGTGACGCCGGCCCACGACAAGAGTTTTGCCGTTGGTTAATAAATAACCACGAAGAAAATGTTTTGTGGACCGACGAAGCTCTTTTTACGAGAGTGGGTATTTATAACATTCACAATGAGCACTGGTGGTCTTTTAATAACCCACATAAAATTAAAGAACACTACCACCAGCAAAGATTCAGTGCAAACGTGTGGGCAGGTGTTTATAAAAACGTAATAATAGGGCCTGTTTTTATTGAAGGACGCCTGACGGGAGGTAATTATTTAAACATGCTTCGTGAGGTGATAGAAGAGAAAATCGAAGACGAGTTGCCTATCGCCAGACAGCTGGACCGCAACTTTTTTTTCATGCAAGACGGCGCACCGCCTCACTACGCAGTGGCAGTACGAGAGTACTTAAATCAAAGtATGGCGCGAAATAAGGTGTTAGTAAGAAAAAGAGGTGGACATTCGGCTGCCAATATGCTTAAGGCCCTTCAATTGCATAGATCAGGCGAAAGTATTAGAAAATCAGCGAAAACGTATGACATTGCGTACCCAACTTTACGACGCTACGTAGAAAAAAACTTGCACGTCAACGTAGAGGACCTTGCTAGGAAGAGATTGCTACCGAATTATGAAAATCATCTCATTTTTACCAGCGAACAAGAAGATGTTTATAAAGAGTACATTATAGaatgcgctttaaaattttatggacTGACCCCAAAAGACTGTCGTAAATTAGCGTACCAAATGGCGATGGTAAATAACATAACTATCCCAAATAGTTGGCAGCGAGAAAAAATGGCAGGAAAAGAGTGGTTTCGGTCATTTAGAAAACGTCACCTTGACCTTTCAATAAAGAAACCTGAAGCTTGCAGTTTAGCCCGCGCGACAGCATTTAACAAGAAGACGGTCACATCATTCTTTGATAATTTGAAGACGGCAATGAGTCGTCATGAGTCCTTCAGTTCTGGTTGCCGGTTGTACAACTTAGATGAAACAGCCACGACAACTGTCCAGCGTCCACAAAAAGTTGTAGGGCCTAAGGGAAAGCACAATATTGCGAAGGTCACAAGTGGCGAAAAGGGAGTTTTAGTAACCACATGCCTTATAGTATGTGCTTCTGGTCAAGCCTTACCGCCTGCGCTTGTATTCCCGCGGAAAAATTTCAAAGACATCATGTTGAGAGGTGCTCCTCCAGGTTCTCTTGGGTTGGCACATACTTCGGGGTGGATGACATCTGATTTATTTGTTGAAGTTATGAAGCATTTTATCAAACATGCCGCTGCTAGCCTAGAGAACCCAGCACTCCTAATCTTAGATAATCACGAGTCACATCTGTCAATCGAAGCTTTGGAATTAGCAAAAAGTTCAGGTGTCACAATTCTTACATTGCATCCTCACACCACAGCCAAGATGCAGCCTCTAGATGTCGGGTTAAATGGCCCCTTTAAAGTCTATTATAACAGCGCAATCGACTCCTGGATGGTGAGACATCCAGGAAGGTCTATGACTATCTACGATGTGGCGGAGTGTGTTGGAGAAGCCTACGCTAGAGCAATGACACCTGTGAACATTTTTGCAGCTTTTAAGAAGTGTGGTATATTTCCTTTTAATCCGGAAGTGTTCACTGACATCGACTTTCTGCCGTCGGACGTGACTGACAGACCTGAGCCTGAGCCACAAGACCAAAATTTAGATCCCAATGCACAAAATGTTGAACACGAATCAGTTGAATCAGATGACACATTTTGTGAAGATGGGAATGTGAGCCCATCACTGTTAAATGCTGATGATGAGGCAGAGATTAACACTGATCATGTGGCAAAGATAAACACTGATAATGTGGCAGAGATTCTAGGTATAAATGAATCTACAGAACGTATTTATACAGCATCACCCCGGATTATTCAAAGTTCTCCAATTGCAGGATTATCAAAGAATATCTCTTTGATTTCTCCTAGACAATTCATGCCACCAATTAAAGCTGGGCCCAGATCTAATAATAGAAAACAtagaaaaaaaggaaaaagcAGAATTGCAACTGACACACCCGAGAAAAAAGAAATTACAGAAAGCAAGACAAAGAGACAAGAAACAAAAGCTAAAGCAAAAGAAGTAAAACGCGCCGTGCTATTAGATAAAAAGATGAAAAGAAATGccccaaagaaaaaaaagaagaatGACACTGATGAGTCTACTTCTGAGGAAGAACTCGAAAACGTATTAGAAGTTAGTGAGACTGAAATAAGTGATATAGATGGATCTGAAGATGATGAAGAAATGTTGGTTGTGAGAGGAAATTTTGAGAAATTGACGCGTAAACCAATTGAAGATGACTACGTTCTTGTAGTTTTTaacgcaaaaaatattaatgtttaCTATGTGGGCAAGATTATTGAAGTTGACACTTGCAACTATGGAGTTTCATTCATGCGGCTTATTAATAAACAAACTATGAAGTTCCGGATGCCATTGGAGCCTGATTTGGCTGATGTGAAATTAAAGGATATTAAAATGATTCTGCCACAGCCAAAAATTAATGGAACACAAAATCGGAACTCAACGTTCAACTTTCCAATACGTGTTGCTCCGACTATTAACTTACGTTAG
- Protein Sequence
- MFTNREYYEMVRSYFVSGENTVAARRLYAEENHGQFTAPAHAQGGGGRPPLAVEIEEMIFAFFEEDPRRSTNDAARRFGVSQYVVWKLLNTAGMHPYHYQPVQAFHAGDAGPRQEFCRWLINNHEENVLWTDEALFTRVGIYNIHNEHWWSFNNPHKIKEHYHQQRFSANVWAGVYKNVIIGPVFIEGRLTGGNYLNMLREVIEEKIEDELPIARQLDRNFFFMQDGAPPHYAVAVREYLNQSMARNKVLVRKRGGHSAANMLKALQLHRSGESIRKSAKTYDIAYPTLRRYVEKNLHVNVEDLARKRLLPNYENHLIFTSEQEDVYKEYIIECALKFYGLTPKDCRKLAYQMAMVNNITIPNSWQREKMAGKEWFRSFRKRHLDLSIKKPEACSLARATAFNKKTVTSFFDNLKTAMSRHESFSSGCRLYNLDETATTTVQRPQKVVGPKGKHNIAKVTSGEKGVLVTTCLIVCASGQALPPALVFPRKNFKDIMLRGAPPGSLGLAHTSGWMTSDLFVEVMKHFIKHAAASLENPALLILDNHESHLSIEALELAKSSGVTILTLHPHTTAKMQPLDVGLNGPFKVYYNSAIDSWMVRHPGRSMTIYDVAECVGEAYARAMTPVNIFAAFKKCGIFPFNPEVFTDIDFLPSDVTDRPEPEPQDQNLDPNAQNVEHESVESDDTFCEDGNVSPSLLNADDEAEINTDHVAKINTDNVAEILGINESTERIYTASPRIIQSSPIAGLSKNISLISPRQFMPPIKAGPRSNNRKHRKKGKSRIATDTPEKKEITESKTKRQETKAKAKEVKRAVLLDKKMKRNAPKKKKKNDTDESTSEEELENVLEVSETEISDIDGSEDDEEMLVVRGNFEKLTRKPIEDDYVLVVFNAKNINVYYVGKIIEVDTCNYGVSFMRLINKQTMKFRMPLEPDLADVKLKDIKMILPQPKINGTQNRNSTFNFPIRVAPTINLR*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -