Gale025927.1
Basic Information
- Insect
- Glaucopsyche alexis
- Gene Symbol
- -
- Assembly
- GCA_905404095.1
- Location
- FR990056.1:1095048-1116982[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.6e-09 4.2e-06 27.5 0.0 2 39 422 460 421 464 0.90 2 4 6.9e-11 4.3e-08 33.9 0.1 1 39 475 513 475 516 0.94 3 4 4.2e-14 2.7e-11 44.1 0.3 2 45 531 574 530 574 0.96 4 4 1.7e-16 1.1e-13 51.8 0.0 2 38 582 619 581 623 0.93
Sequence Information
- Coding Sequence
- ATGATACGACCTTCCCCGGTGACTCGATGCACGCGGCGGAAGCTTGCAGACCCACTTGGCCCACCTGGAGACGATTCCACTCGACGTACCACGGCGAAGGTTCACGACGAACACGTAGACGTAGGCTCCTCCACTTCCCGAGTTCGTTGGACCCGATACCCCTTCTGGGCCGAGACTCCAACACGCACTGAACCGGGAGCCGATCGGGCAGGGCAGGAACACACAGCACTTTTTCACCCACACGGTACTCACGATCCGACCGTGGGGCCAACACGTTGGACCAGAATACTGTCACTGGCAAGACAGCcggaatccgtcgagtcggcgatcgccgccgcccccgccgcatGCGTTCCCCTCCGGGTCACGCCGACGCCGAGTCAATCGAAAACTCAGCAGCGAAATTTTGCGAGTGTAGCCGCTTGCCCCGCACCTCCCCTGCGGGCTAAGACAAAGGGGGAGGAAGAGAGCCGCAAGGCCacagagagccgcaaggctacggaaagccgcaaggctgagcctcctcgatctggcaaggacgagagcaggaggtgcgatgaggagggcttcacactggtggagagaaaaaagaagaagaagcccgccgtccgcaaccaccgcggcaccgcaccctacgtacccgagctgcgcctgcggtgtgaagtacccgcgacgccgctgtacgtctcccgcctgcactggtcgatggaggtcgaggacgtcgtagactacatccgtaagaagacgtccctcgccttaagggtcgatcgtctggagtctcgccacaaggaGATGCCCGGTTACAACTTGAATTCGATTAAATGTGAGCTAACCACAGAAGATGACAATAGCCAGCCAACGACATTGGACATGTGGTACCACGCTGAGTCTAATCTGCCGACCGACAACAATCGATCATCACATTTGCTGCATCAGTTACACGGTACCCTGGAGGAGCTAGCACCGGCACCAGCCGGGCCCGCCGCGACTCCGGTAGAGGAGCACCTGCCGTCGCCGACGGAGGCATCGTTGGCGACCCTCCAGCCTGCACCCGTTGGCAATACGATGGGTACTTCAATAATCGACATGCACGTGAAAATGATGAATGTGAAGGAAGTAGCTGACTCCGCAGACTTTGTTCCACTGATGGCGGTCAAAGAGGAGCTGAATTCTGAAGGTGAGCAACAGCAGAGCAGCGACGACACGAGCGACTCCGCCCCGGAACAGTCGGCCGTCGGTCGCGGGAGTCCCAAGGCGTGGTCCCCGCAGGACATGGACAGTGCGCTCGATGCGCTGCGGACGCACAACATGACTCTGACAAAGGCATCAGCTACGTTTGGTATTCCGTCCACCACACTCTGGCAGAGGGCGCACAGACTGGGCATAGACACGCCCAAGAAAGATGGCGCATCTAAATCCTGGAGCGAGGAAGATTTGAAAGGGGCTCTGCAAGCGCTGCGGGCGGGGACTATATCCGCTAATAAAGCTAGCAAAGCTTATGgCATCCCCAGCAGCACTCTATACAAGATAGCGCGGCGCGAGGGCATCCGTCTCGCTGCGCCGTTCAACGCCGCACCCACGGCGTGGCGCCGCGCGGACCTGGCGCGCGCGCTCGCCGCCGTGCGCGCCGGCGCCGCCGTGCAGCGCGCCGCCTCGCACTACGGCATCCCCACCGgGACTTTATATGGAAGGTGCAAGCGAGAGGGAATAGAGCTGTCCCGCTCTAACCCCACACCATGGTCTGAAGGAGCTATGGAGGAGGCGCTGGAAGCGGTCAGGGTGGGCCAGATGTCCATCAACCAGGCGGCGATCCACTTCAACCTGCCCTACTCGTCGCTGTACGGCCGCTTTAAGCGGTGCAAGTTCCAGCCGCCGCAGggTATCCAACCACCAAATCCCATGGACTTTTCTGAGCAAGTGCTGGATGGTCACCAGTTTTCTGCGGACATGAGTTCGTCGAGCGGTTTAGACGACCTACACCGGACGTACACACTGGCGGACGTACAGTCCCGAACAAACGATGTTCACTCGCGGTCGCTGGACGAAGTACACTCGCAAACACAAGCGCCTGCACACTCGCGGGTACAAGCGGACGCACACTCGTATCCGCTAGATGGCGTAAACTTCCACACGCAAACCCAGCTACAGTCGAGAACACAATCCCTACACCCTACCACGCAAGACGTACAGCAAGTGGACGAGGTACATTCGGGTACAGAAGTGCGAACTTTCAGCGGCGTGCGTCAAGCCCTATACGCGCTCGAGCCGTGCGGGCCGGCGTTCTGCGTCGCCAGCTGA
- Protein Sequence
- MIRPSPVTRCTRRKLADPLGPPGDDSTRRTTAKVHDEHVDVGSSTSRVRWTRYPFWAETPTRTEPGADRAGQEHTALFHPHGTHDPTVGPTRWTRILSLARQPESVESAIAAAPAACVPLRVTPTPSQSKTQQRNFASVAACPAPPLRAKTKGEEESRKATESRKATESRKAEPPRSGKDESRRCDEEGFTLVERKKKKKPAVRNHRGTAPYVPELRLRCEVPATPLYVSRLHWSMEVEDVVDYIRKKTSLALRVDRLESRHKEMPGYNLNSIKCELTTEDDNSQPTTLDMWYHAESNLPTDNNRSSHLLHQLHGTLEELAPAPAGPAATPVEEHLPSPTEASLATLQPAPVGNTMGTSIIDMHVKMMNVKEVADSADFVPLMAVKEELNSEGEQQQSSDDTSDSAPEQSAVGRGSPKAWSPQDMDSALDALRTHNMTLTKASATFGIPSTTLWQRAHRLGIDTPKKDGASKSWSEEDLKGALQALRAGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLARALAAVRAGAAVQRAASHYGIPTGTLYGRCKREGIELSRSNPTPWSEGAMEEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKFQPPQGIQPPNPMDFSEQVLDGHQFSADMSSSSGLDDLHRTYTLADVQSRTNDVHSRSLDEVHSQTQAPAHSRVQADAHSYPLDGVNFHTQTQLQSRTQSLHPTTQDVQQVDEVHSGTEVRTFSGVRQALYALEPCGPAFCVAS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -