Glac052770.1
Basic Information
- Insect
- Gerris lacustris
- Gene Symbol
- -
- Assembly
- GCA_951217055.1
- Location
- OX578286.1:38376277-38395128[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.038 6.3 9.0 1.5 5 21 53 69 51 70 0.94 2 12 0.00087 0.14 14.2 3.4 1 23 76 99 71 99 0.96 3 12 5.1 8.4e+02 2.4 0.7 6 21 131 146 129 147 0.88 4 12 0.04 6.7 9.0 5.0 1 23 153 176 153 176 0.96 5 12 0.086 14 7.9 1.1 6 22 278 294 276 294 0.94 6 12 0.0004 0.066 15.3 2.4 1 23 300 323 300 323 0.93 7 12 0.085 14 7.9 0.6 5 22 344 361 343 361 0.92 8 12 0.0004 0.067 15.3 2.5 1 23 367 390 367 390 0.93 9 12 0.22 37 6.7 0.5 6 21 419 434 417 435 0.93 10 12 0.0038 0.64 12.2 4.7 1 23 441 464 441 464 0.94 11 12 0.18 30 6.9 4.6 5 21 489 505 488 506 0.93 12 12 0.083 14 8.0 7.8 1 23 512 535 512 535 0.95
Sequence Information
- Coding Sequence
- ATGGAGATCTTCATTTACTTCCTGTTAATTCCTACAAGTGCCGTATCGACAGAGATCACTACAAGCTACTTCGAGACCGCTACTCTTTACCCTGTATCTAGTTATGTTGGATCATTCAACGAGTATTACAATCACGATCTGAGCATGTACGTCTGTAACTGCGGCCTTAAGTACACCAATAGAAGTCATTTTAGATATCATCTCAGGAACGAATGCGGTAGAAAGTTCTTTTGTCCAAACTGCACTTACAGTAGTAGTATAAAGAGTCATCTTAAACGACATATAATATCTCAGCATGTTCATATTGATGGACATTTGATAGCAGAAGTAAATCCAAGTAGTTTGATGGATCAGTATTTCAATCCCGAACTGAGCATGTACGTCTGCAGCTGTGGCCTCAAATATACTAATAAAAGACATTTTAGATTTCATACTAGGAACGAATGTGGTAAAAAGTACTGCTGTCCACACTGCAACTATAGCAGTGGCATTAAGAGTCATGTTAAACGACACTTAGTAACTCAACATgttaatattgatgaaaatttgttaaCTGAAATCATATCACGGAAGGAGATAGTTTTGGCAAATTCGAACATGGAAAGAGACAATTTCGCAGATAATATCACGGAAGGAGATAGTTTTGGCAGATTCGATCATGAAAAGAGACATTTGCAGATAATATCACGGAAGGAGATAGTTTTGGCAGATTCGATCatgaaaagaaacaattttgcAGATAATTTCACGGAAGGAGATAGTTTTGGCAGATTCGTTGGTCTTGACCTTTCACGTTTCTTCAACGCAGCTCTTCAGATGTTCGTCTGCTCTTGTGGTCTAAAATTTTCAAGACGTCATAATTTCTCATATCACAAAAGGAAGGAATGCGGCAAGAAATTCCCCTGCCCATATTGTCCTTTTAGCTCAAGTACCAATTGCAATTTGAAGAAACACGTTACCTTACAACATTTAGCAATTGGTCTTGACCTTTCCCGATTCTTCAACACAACTCTTCAGATGTTCGTCTGCACTTGTGGCCTCAAATTCTCTAGACGTCAAAATTTCTCGTATCACAAGAGGAAGGAATGCGGCAAGAAATTCCCCTGCCCATATTGTCCTTTTAGCTCAAGCACTAACTGCAATTTGAAGAAACACGTTACCTTACAACATTTAGCTACTGATTTATCAATATCTCTTGACGGAAGAAATATTTTAAAGTACTTCGTGTCTGAACTAAAGATGTTCGTGTGTTCGTGCGGTGTTAAGTTCAGTCACAAGAATAACTTTATGTACCACAAGAAGAACGAATGCGGCAAAAGGTTCGCTTGTCCATACTGCGAGTTTTCATGCAGCAAAAAGTGCAATCTCAAACAGCATGTAGCTGTTAGACATGCAGTTGTAAATCATACCACAAATCCGTTATGGGATGCATTCTTCGACTCGAGCTTGTCTAAATGGGTTTGCGACTGCGGACTTAAGTTCAGATACAAGAAGCACTTTACACATCATCGTAAAAACGAGTGCAGGCGACGATTCTTCTGCCCATATTGCCGATCTCACTTCGCCAAAAAGTGTCATCTGACGCAACACATCGCATCGAAACACTCCATCAATCCGAACGAAGGTGGACACAACCTTGTCGGAGAATATTGGATACCAAAGATCTACCTTACTGAATTGGATCAGTAA
- Protein Sequence
- MEIFIYFLLIPTSAVSTEITTSYFETATLYPVSSYVGSFNEYYNHDLSMYVCNCGLKYTNRSHFRYHLRNECGRKFFCPNCTYSSSIKSHLKRHIISQHVHIDGHLIAEVNPSSLMDQYFNPELSMYVCSCGLKYTNKRHFRFHTRNECGKKYCCPHCNYSSGIKSHVKRHLVTQHVNIDENLLTEIISRKEIVLANSNMERDNFADNITEGDSFGRFDHEKRHLQIISRKEIVLADSIMKRNNFADNFTEGDSFGRFVGLDLSRFFNAALQMFVCSCGLKFSRRHNFSYHKRKECGKKFPCPYCPFSSSTNCNLKKHVTLQHLAIGLDLSRFFNTTLQMFVCTCGLKFSRRQNFSYHKRKECGKKFPCPYCPFSSSTNCNLKKHVTLQHLATDLSISLDGRNILKYFVSELKMFVCSCGVKFSHKNNFMYHKKNECGKRFACPYCEFSCSKKCNLKQHVAVRHAVVNHTTNPLWDAFFDSSLSKWVCDCGLKFRYKKHFTHHRKNECRRRFFCPYCRSHFAKKCHLTQHIASKHSINPNEGGHNLVGEYWIPKIYLTELDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -