Basic Information

Insect: Gerris lacustris
Gene Symbol: -
Assembly: GCA_951217055.1
Location: OX578278.1:856472-865906[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.1 1.8e+02 4.4 1.9 1 20 283 302 283 303 0.95

2 10 0.21 35 6.7 1.7 1 23 312 335 312 335 0.96

3 10 2.7e-05 0.0045 19.0 2.9 1 23 341 364 341 364 0.96

4 10 0.014 2.3 10.4 1.0 1 23 370 393 370 393 0.92

5 10 0.24 39 6.6 3.2 1 23 402 425 402 425 0.93

6 10 0.087 14 7.9 8.8 1 23 431 454 431 454 0.94

7 10 0.0014 0.23 13.6 6.5 1 23 460 483 460 483 0.94

8 10 0.00084 0.14 14.3 1.2 1 23 489 512 489 512 0.96

9 10 0.84 1.4e+02 4.8 1.5 1 23 518 541 518 541 0.94

10 10 0.0097 1.6 10.9 4.1 1 23 547 570 547 570 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.1	1.8e+02	4.4	1.9	1	20	283	302	283	303	0.95
2	10	0.21	35	6.7	1.7	1	23	312	335	312	335	0.96
3	10	2.7e-05	0.0045	19.0	2.9	1	23	341	364	341	364	0.96
4	10	0.014	2.3	10.4	1.0	1	23	370	393	370	393	0.92
5	10	0.24	39	6.6	3.2	1	23	402	425	402	425	0.93
6	10	0.087	14	7.9	8.8	1	23	431	454	431	454	0.94
7	10	0.0014	0.23	13.6	6.5	1	23	460	483	460	483	0.94
8	10	0.00084	0.14	14.3	1.2	1	23	489	512	489	512	0.96
9	10	0.84	1.4e+02	4.8	1.5	1	23	518	541	518	541	0.94
10	10	0.0097	1.6	10.9	4.1	1	23	547	570	547	570	0.96

Sequence Information

Coding Sequence: ATGGATATGTCAATGATAGAGGATGTCAAGTGCTTCGACGAAACAGCTTGCTTTATCTACGGCTCCGTCTCGTCGTCTCTCCCTCAAGGTTTGGCTGAAGAACCATGTGAAGTCGATAGCAAAGAGTGGTTTGGACAACTTGAACCATGCTCATCTGTCAGGGATTCGACAGAGGACCACAATCCAGGTTTATTCAAAGATTCATGTGAAGTGGATAGTAAGGAGTGGTTTATAAGAACTGAAGCTGCTCCGTGTGTCAGGGACAAAACAGACGTAGAACTAGTTCAACACAATCCAGGTTTGGAGTCGGAACAAGAGCCGAGTCTGCAGATGTGTATTAAAACTGAACCAACTTCACCTGACAGCCACCAAGTAGAGCAGTCCCAGGGTTTGGAGTCGGAACAAGAGCCGAGTCTGCAGATGTGTATTAAAACTGAACCAACTTCACCTGACAGCCACCAAGTAGAGCAGCCCCAGGATGAGACAAGACTAGTTGCAGACCAGGTGAATGGTGAGTTTACAAGGTACTCGCTGGCAAGTAAACTAGCGAGTGAGTCAGTCTTGGCTTCACTGGATGCTAGAGAGGCGCGgtcaattcgcaatgcaaaagaagctctaaaggctccaggactggaaactCACCTGAACTACATCGGTGGCAACTTagggacatttcctgacataattgAAGGTGCGGCTAATGAAGAGACGGCAGGAAGAGACGGAAGTCATCGGAGCTCGTATGAAACTCGTTCTAGACAACTACGTTCTGATCTCAAGATCCGAGTCGACGCTGCCAGCACTAAGGAAACTTTGTTGATTCGAGTCAAGGCGTTACCCAAGCCTTTCAAGTGCGCTCACTGTGAGCATACCAACAACAGGAAGGACAGACTCAAAATGCATATCGActgtgtacataacaacatcAAGGCGTTTCAGTGCCCTAGTTGCGACTTTAAAACTAACTGGAAGGGTTGCCTCACTACCCATATCAACAACGTACACAAGGCGATAAAGCGCTTTCAATGCAACCATTGTAAATACAAGGTCAACCGCAAGAGTGCACTGAAAAGGCATATCGACTCCGTACACAACAAAGTCAAGAATTTCCAGTGTCCACATTGCGATTATAAAACCTACTGGAGGGATACTTTGAAAACCCATATTGATGCGGTCCATAAAAATTCGGAGAAATCCAAGGAATTTCAGTGTCCACATTGCGACCATAAAACCAACTGGATTTCCTGTCTGAGAATTCATATCAACGGGGTACACAAGAAAATAAAGGCGTTTCAGTGTCCCCACTGTGACCATCGAACCCATAGGAAATACGGAATGAAACGCCATATCCACTTTGTACATGGCAAAGTAGAAaaatttcagtgccctcactgtgagtgtAACACTAAAACCAAATACCAACTGACGAGGCATATCGACCACGCACATAACAATGGAAAGATGTTTCCGTGTGAGCATTGCGAGTACTCTACTAAGTGGAGTAGTAACCTTAAAAAGCATATCGACAGcgttcataagaaaataagatCCTTTGAGTGCCACCAGTGTAAATACGGCACCAACTGGAGGAGCAAGATTATAAATCATATTCAAAGAGTTCATGACAATATAAGGGCGTTTCCGTGCCCTCACTGTCAAACCAAGCTCAAAACCAAACTCTGTCTCCAAGCACACATCACATCTTTTCATTAG
Protein Sequence: MDMSMIEDVKCFDETACFIYGSVSSSLPQGLAEEPCEVDSKEWFGQLEPCSSVRDSTEDHNPGLFKDSCEVDSKEWFIRTEAAPCVRDKTDVELVQHNPGLESEQEPSLQMCIKTEPTSPDSHQVEQSQGLESEQEPSLQMCIKTEPTSPDSHQVEQPQDETRLVADQVNGEFTRYSLASKLASESVLASLDAREARSIRNAKEALKAPGLETHLNYIGGNLGTFPDIIEGAANEETAGRDGSHRSSYETRSRQLRSDLKIRVDAASTKETLLIRVKALPKPFKCAHCEHTNNRKDRLKMHIDCVHNNIKAFQCPSCDFKTNWKGCLTTHINNVHKAIKRFQCNHCKYKVNRKSALKRHIDSVHNKVKNFQCPHCDYKTYWRDTLKTHIDAVHKNSEKSKEFQCPHCDHKTNWISCLRIHINGVHKKIKAFQCPHCDHRTHRKYGMKRHIHFVHGKVEKFQCPHCECNTKTKYQLTRHIDHAHNNGKMFPCEHCEYSTKWSSNLKKHIDSVHKKIRSFECHQCKYGTNWRSKIINHIQRVHDNIRAFPCPHCQTKLKTKLCLQAHITSFH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -