Glac022286.1
Basic Information
- Insect
- Gerris lacustris
- Gene Symbol
- -
- Assembly
- GCA_951217055.1
- Location
- OX578278.1:2017501-2027213[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.8 3e+02 3.8 2.1 1 23 95 118 95 118 0.93 2 14 0.057 9.4 8.5 2.4 1 23 129 152 129 152 0.95 3 14 0.64 1.1e+02 5.2 5.5 1 23 155 178 155 178 0.96 4 14 0.019 3.2 10.0 0.7 1 23 183 206 183 206 0.95 5 14 0.074 12 8.1 1.4 1 23 210 233 210 233 0.93 6 14 0.006 1 11.6 3.3 1 23 236 259 236 259 0.94 7 14 0.0059 0.98 11.6 0.5 1 23 262 285 262 285 0.96 8 14 1.8 3.1e+02 3.8 1.4 1 23 289 312 289 312 0.93 9 14 0.4 66 5.8 0.1 1 23 316 339 316 339 0.89 10 14 0.0017 0.29 13.3 2.3 1 23 342 365 342 365 0.98 11 14 0.022 3.6 9.8 1.3 1 23 368 391 368 391 0.95 12 14 1.4 2.3e+02 4.1 2.7 1 23 395 418 395 418 0.89 13 14 0.012 2 10.6 0.3 1 23 422 445 422 445 0.94 14 14 0.0036 0.59 12.3 1.6 1 23 448 471 448 471 0.97
Sequence Information
- Coding Sequence
- ATGGTGGGTGAAGGAGTTAGGAGTATTGTAGGTTTATCCAAAGATCCATTTCCATTTGATAGTGAGgcatggtttgtaaaagcagaACCTGCTTTACCTGCCGGGGATGCAACAGACGTTGAACTAGAGCAACACAATCCAGGTTTACCTGAAGATCCACTTGAAGTCGATAATAAGgcatggtttgtaaaagcagaACCTGCTTCACCTGCCAGGAATACAGCTGATATAGACCAGAATCCAGGTCCGGTAAATAAAAAGAAGCCGAGAAGAAACAGTAGTTTCCAGTGCTTGCACTGCCCACATACTGCACAACTACTGACCGATCTGCAGGTCCATTTCTACACTGTACATCAGAAATCTAAAGAAAAGAACCTAAAGCAGTTTCATTGCTCCGACTGTAAGTGGAAAGCGGGTAGGAGAGACTATCTCGACAGGCATCTTTATAGTAAACATAAGAAATTCCAGTGCCCGCATTGTGTCCATCAAACCTGCGAGAAGGAAAGTATGAAATCGCATATCGACTCGACACATAAACATCCTCCGcatcagtgccctcactgtgactaTCGAGCCAACGGCACGGTACTTCTAAACGTTCATATCGACTCCTCACACAAGTACCATCATAGGTGCCCCCACTGTATGAAAGTATTCCTGACAAAAGACATTCTAAGAAATCATATGATCGCGGCTCATAACGAATTCCTGTGCTTTCACTGCGACCATAAAACCGACAGGGAGGATTATCTGATAAGGCATATCAACTCGGAACATAACGGATTCGAGTGTCCTTATTGTGACCATCAAAGCGACAACGAGGAACGTCTGAAATCTCATATCGACTCGGTACATAAGGACGAATATCGGTGCTCTCAATGTCGTCATCAAAGCAAAAGCGAGGAAATTCTACAAATGCATATTGACAGGGTGCATAAGTATTGTTATAAGTGCTCTGACTGTGTGGAAATATTCTTGACCGAAGAAATTCTGCGAAATCATATGATCGCCGTACATAATGAATACCGGTGCTTCCATTGTGATTATAAAACCAACAGGGAGGACAGACTGATAAGCCACATTAACTCGGTCCATACGAAATTCGAGTGCCCGTATTGTGAACACCAGAGTGACAGCGCAGAATGTCTAAATTCGCATCTCGACTCCGTACATAAGATGCGTTACCAGTGCCCTCATTGTTACCGTCAACATGACACCAAGGAAATTCTACAAACGCACATTGACAGGGTgcataaatattgttataaatgttcTAACTGTGTGAAAGTATTCCTAACAAAAGACATTCTGAGGAATCACATGATTGcagttcataatttattccagtGTTATCATTGTGACCATAAAACTGACAGCGAGGGAAGTCTTATCAGCCACATTATCTCGGTCCATAACAAATCGGAGTGA
- Protein Sequence
- MVGEGVRSIVGLSKDPFPFDSEAWFVKAEPALPAGDATDVELEQHNPGLPEDPLEVDNKAWFVKAEPASPARNTADIDQNPGPVNKKKPRRNSSFQCLHCPHTAQLLTDLQVHFYTVHQKSKEKNLKQFHCSDCKWKAGRRDYLDRHLYSKHKKFQCPHCVHQTCEKESMKSHIDSTHKHPPHQCPHCDYRANGTVLLNVHIDSSHKYHHRCPHCMKVFLTKDILRNHMIAAHNEFLCFHCDHKTDREDYLIRHINSEHNGFECPYCDHQSDNEERLKSHIDSVHKDEYRCSQCRHQSKSEEILQMHIDRVHKYCYKCSDCVEIFLTEEILRNHMIAVHNEYRCFHCDYKTNREDRLISHINSVHTKFECPYCEHQSDSAECLNSHLDSVHKMRYQCPHCYRQHDTKEILQTHIDRVHKYCYKCSNCVKVFLTKDILRNHMIAVHNLFQCYHCDHKTDSEGSLISHIISVHNKSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -