Basic Information

Insect: Gerris lacustris
Gene Symbol: -
Assembly: GCA_951217055.1
Location: OX578281.1:61053071-61057120[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00063 0.1 14.7 2.1 1 23 100 123 100 123 0.98

2 15 0.036 6 9.1 6.0 1 23 129 152 129 152 0.97

3 15 0.044 7.3 8.9 0.5 2 23 159 181 158 181 0.95

4 15 0.062 10 8.4 2.9 3 23 216 237 216 237 0.98

5 15 0.65 1.1e+02 5.2 0.2 3 23 270 291 269 291 0.95

6 15 0.0096 1.6 10.9 0.4 1 23 297 320 297 320 0.96

7 15 0.0047 0.77 11.9 3.1 2 23 327 349 326 349 0.94

8 15 0.00023 0.038 16.0 3.4 1 23 355 378 355 378 0.96

9 15 0.028 4.6 9.5 0.6 1 23 384 407 384 407 0.97

10 15 0.075 12 8.1 0.7 1 23 413 436 413 436 0.95

11 15 0.0026 0.43 12.7 0.6 1 23 491 514 491 514 0.95

12 15 0.0033 0.54 12.4 1.6 2 23 530 552 529 552 0.95

13 15 0.023 3.8 9.7 2.6 1 23 558 581 558 581 0.97

14 15 0.64 1.1e+02 5.2 6.9 1 23 596 619 596 619 0.95

15 15 0.00021 0.035 16.1 0.8 1 23 625 648 625 648 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00063	0.1	14.7	2.1	1	23	100	123	100	123	0.98
2	15	0.036	6	9.1	6.0	1	23	129	152	129	152	0.97
3	15	0.044	7.3	8.9	0.5	2	23	159	181	158	181	0.95
4	15	0.062	10	8.4	2.9	3	23	216	237	216	237	0.98
5	15	0.65	1.1e+02	5.2	0.2	3	23	270	291	269	291	0.95
6	15	0.0096	1.6	10.9	0.4	1	23	297	320	297	320	0.96
7	15	0.0047	0.77	11.9	3.1	2	23	327	349	326	349	0.94
8	15	0.00023	0.038	16.0	3.4	1	23	355	378	355	378	0.96
9	15	0.028	4.6	9.5	0.6	1	23	384	407	384	407	0.97
10	15	0.075	12	8.1	0.7	1	23	413	436	413	436	0.95
11	15	0.0026	0.43	12.7	0.6	1	23	491	514	491	514	0.95
12	15	0.0033	0.54	12.4	1.6	2	23	530	552	529	552	0.95
13	15	0.023	3.8	9.7	2.6	1	23	558	581	558	581	0.97
14	15	0.64	1.1e+02	5.2	6.9	1	23	596	619	596	619	0.95
15	15	0.00021	0.035	16.1	0.8	1	23	625	648	625	648	0.97

Sequence Information

Coding Sequence: ATGGATAAGATTAAGGAATTGAAACGAAGACACGAGAGGATGAAAGAAGACCCGCCTCCAAGTACGGAACCGCATCCCTTGCCTCATTCTAGTCTGCCCACAAGTCCACTTCAAGGCGGGGACGGTAACAACTTCAGCGTCGAAAATATCGAGGAGTTCGTTCGCAAACTTATGGAAgAGGAAGAATTACGACGGTCAGCCAAAGCAGAACAGAATTACCGAATCGCAGTGAGAACCGAGCGACCGTGCATTAAAGAGCCCACAGTCAACAGTTTCAAGGCGAATAAAGAGGGGCGCTACGAGTGCGTGCACTGTGGATACATTACCAACCGGAAACTGCACCTGGAGCAGCATCTGGAGACCGACCACAACATGTTGAGGCTGTACCAGTGTCTTCACTGCAAATACAGGGTCAGACTTCTCTCGCATCTCAAGTCCCACGTCAACAAGTTCCACAAGAAGGAGAAGACCATGTACTGCGCACACTGCGAGTATGGAGCCCCACTCAAATCCCAGCTCGTACGtcatattaacaaatttcacCCGCGATATGCCGCCGATAAGATACCCCGCCTTGTAAAGCGTGTCCAAACTACCCAAATCAATACCGTTATAAGATGGAATAAGAAAGCGAAAAAACTTGGGTGCTTCGAGTGCGAGTTCACTACAAGTAACAAAAAACTCCTGGTGCAACATATCCACACCTTCCATGGCGCGCAGAAATCCTGTCAGTGTGGTCTCTGCGATTTGGATTCTCGACTCCACACTCAGACCGACTCTGTCGATATCGTCAACAGCTCTGTTGACTGCGATCAGTGTGAGTTCAGAACTGATACGACTGTCCTTCTCAAGCTACACATCGATTCGGTTCACACTAAATCCAACCCCTTCGCGTGTCCTCATTGCGATTTTACTGCTACAAGAAAAAACGGTATCACCATCCATCTTGACACCGTTCACAACAACGACAAACCTCTCAAATGTACTCAATGCAAATTTAAGACTACCCAGAAATCGACTCTGTCACGTCACGTTAACGAGTTCCATAATAAAATGAGGGAGTTCGAGTGCCCTCATTGCCAACATAAATTTAACCGACAGTTGACTTTAAACAACCACATCGACAGTGTTCACAAGAAGAAAAAACCGTTCCAGTGCTCTAAATGTGAGTACAGCTCAGGGTGGAAGAAAAACCTGTTCCAACACATAAACGTCGTTCACAACGAACCAGGGCCTTTTTACTGTCGCCAGTGCGACTTCGTAGGTGAGACGAAACAAACGATGAGAGTCCACATGATAAATTCTCACCCGGTGATTCCCGAAGTGATGAAACCGAAACCTCCTCGTCGCAAGTACAAACTCGGTCGACCGCCTAAGGTTGTGAAAGCCACCGTCGAGGTGGTGAAAGCCACCGTCGAGGTGGTGAAAGGCACCGTTGAGGTGGTGGACCACTCCAAGAAGAAGAAGCCTTACCAATGCGACCAGTGCGAATACAGAGCCAGTCAAAAGTCCCGCCTCAAGGACCACCAAGAGCTTATTCACTCAACCAGTTTCAAGAAGTACGTACAGAACAACGAGCAGCTGTTGAAATGTCCCCTCTGTAAATACAGCACCAGGAAAAAAACCACACTGTTGTCACACATCTACAAGCTGCATTCCCTCGACAAGTGTTTCAATTGCAACCACTGTAGTTACGGAACGGATTACAGAGGCGACCTAAAGGAGCACTTTAAGACTGATCATCCCGTCGAAAAACCCAGCGACCCTCGTCCCGCCGTCAGACAATTCCACTGCGATCAGTGTCCTTACAAAGCTTACCAGTACTGTCACCTAAAACGACATCAAGACAGTGTGCATAACAAAGTCAAGCCTTACGTGTGTTCCCTGTGCGATTATAAAGCCGGCCGCAAATCCCACCTCCAGAAACACGTCGCAACTATACACGGCACAACCTTAGGTGACCAACTCATTATCGACCTTACTTAG
Protein Sequence: MDKIKELKRRHERMKEDPPPSTEPHPLPHSSLPTSPLQGGDGNNFSVENIEEFVRKLMEEEELRRSAKAEQNYRIAVRTERPCIKEPTVNSFKANKEGRYECVHCGYITNRKLHLEQHLETDHNMLRLYQCLHCKYRVRLLSHLKSHVNKFHKKEKTMYCAHCEYGAPLKSQLVRHINKFHPRYAADKIPRLVKRVQTTQINTVIRWNKKAKKLGCFECEFTTSNKKLLVQHIHTFHGAQKSCQCGLCDLDSRLHTQTDSVDIVNSSVDCDQCEFRTDTTVLLKLHIDSVHTKSNPFACPHCDFTATRKNGITIHLDTVHNNDKPLKCTQCKFKTTQKSTLSRHVNEFHNKMREFECPHCQHKFNRQLTLNNHIDSVHKKKKPFQCSKCEYSSGWKKNLFQHINVVHNEPGPFYCRQCDFVGETKQTMRVHMINSHPVIPEVMKPKPPRRKYKLGRPPKVVKATVEVVKATVEVVKGTVEVVDHSKKKKPYQCDQCEYRASQKSRLKDHQELIHSTSFKKYVQNNEQLLKCPLCKYSTRKKTTLLSHIYKLHSLDKCFNCNHCSYGTDYRGDLKEHFKTDHPVEKPSDPRPAVRQFHCDQCPYKAYQYCHLKRHQDSVHNKVKPYVCSLCDYKAGRKSHLQKHVATIHGTTLGDQLIIDLT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00743109;
90% Identity: iTF_00743109;
80% Identity: -