Glac051268.1
Basic Information
- Insect
- Gerris lacustris
- Gene Symbol
- -
- Assembly
- GCA_951217055.1
- Location
- OX578286.1:6155394-6166862[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.0092 1.5 11.0 1.0 2 23 312 334 311 334 0.95 2 24 0.00099 0.16 14.0 2.5 1 23 355 378 355 378 0.98 3 24 2.5 4.2e+02 3.3 0.4 1 23 384 407 384 407 0.87 4 24 0.77 1.3e+02 4.9 0.1 8 23 409 425 408 425 0.93 5 24 0.0099 1.6 10.9 0.5 1 23 435 458 435 458 0.96 6 24 0.034 5.7 9.2 2.2 1 23 464 487 464 487 0.96 7 24 0.015 2.5 10.3 0.1 1 23 493 516 493 516 0.95 8 24 0.019 3.1 10.0 0.3 1 23 522 545 522 545 0.97 9 24 0.058 9.7 8.5 1.1 1 23 551 574 551 574 0.92 10 24 0.00036 0.06 15.4 4.2 1 23 580 603 580 603 0.97 11 24 0.017 2.8 10.2 0.3 1 23 611 634 611 634 0.92 12 24 0.0047 0.77 11.9 0.9 1 23 640 663 640 663 0.97 13 24 0.22 37 6.6 1.5 1 23 981 1004 981 1004 0.95 14 24 0.33 54 6.1 6.6 1 22 1010 1031 1010 1033 0.90 15 24 0.1 17 7.7 7.0 1 23 1039 1062 1039 1062 0.98 16 24 0.00072 0.12 14.5 2.6 1 23 1068 1091 1068 1091 0.96 17 24 0.015 2.5 10.3 1.3 1 23 1097 1120 1097 1120 0.97 18 24 0.0052 0.86 11.8 2.9 1 23 1126 1149 1126 1149 0.97 19 24 0.0029 0.49 12.5 0.2 1 23 1160 1183 1160 1183 0.96 20 24 0.17 27 7.0 1.6 1 23 1189 1212 1189 1212 0.92 21 24 7.2 1.2e+03 1.9 0.6 1 23 1218 1241 1218 1241 0.85 22 24 0.97 1.6e+02 4.6 0.7 1 23 1247 1270 1247 1270 0.88 23 24 0.028 4.6 9.5 4.7 1 23 1276 1299 1276 1299 0.94 24 24 0.01 1.7 10.8 3.5 1 23 1307 1330 1307 1330 0.98
Sequence Information
- Coding Sequence
- ATGAAGGATTCATCactcaattataaaattataacttcatcATCAGAAGATGATGAAGTCGGATCGATTGGTTTTAAAGGAACCAACGATGAATTTAAGAATTCTTTTAATGAACAGTATTCATCTCTTTCTGGCGATACTTTGCAAATATCTTCCAGATTTAACCTTAACCAAAGTATTGAAGTCAAAGTTGAAACTGTGAACTGTAAAGAAGAATGTGATCCATCTTCATCAAGTGGTGATAATTTAGAATCACCTAATGATGCGATTTCTTCTTCGGACGAATTTGATGAAACTAATGTGGAAATGAAGGAACCAAAAACAGAATGGTATGAGGCAGCGGCCCAATCATCTTCCGATGTTAGTTGCACTTCTAATGATGAATGTGATAATTCTACTGAATCTGATGGAATCTTGAACTTGTCAACGTTAGACACGCTTTTCGGTGAAATGATGGATTACATGAAAAGTTGTAAACTAGAAATTAAGCCAATAGATCTTAACTTCAGCGATAAGGAAATCAAGGAAAATTGGTCAATTTGTGATAAAAATAACGATTTCAGTTTGTTGCAAAGTGATTTCTCTGAGGGTGAAGTAGCTTACATGAAAAGTTGTAAAATTGTACTCAGTCCTATAGATGTTAACTCTAGCAAAGAGGATGTCAAGGAATATGAAAATGATGATTACAGTTTGTTGCAAAGTGATTTTTCTGAAGGTGAAATTGCATATATGAAAAGTTGTAGAATTGTACTCAAGCCCGTTGGTGTTAACTTCAGCGATGAGGGTGATGAGGAAAATTGGTCAATTTGCGATGAAAATAACGACAACAGTTCATTGCAAAGAGATATCTCTGAAGGGGAACTCCCTTACATGAAACGTTGTTTTgtaaaactcaaaaaattaaatgaactgAAAGAACCCGTACGTTATTTAGTATGTCCCCATTGTAAATTCAGTACAAAGTCAATCGATGCCCTTCGTCTGCATATTACCAAAATGCATGCTGAATTTAAAGGTTATACATGTCGACATGTGAGGAATGTTCATCGCAAAGAGCGACCTTACCAATGTCACTACTGTGGTCATCGAACGGGTCTAAAGGGATCTCTTACTCAGCATATTAAGGTGGTTCATATGAAGATCAAGCCCTTTAAATGTCCACTTTGCAGCTATCGTGCGCCTCGTAATAATGCTATGAAATTCCATATTACTTCAGTCCATGAAAAAgCATTTTTCGATAAGTTTGGATTGCAGAAACATATTAATTCTATACATGATAATACGCATGTGGAAATAAAACCTTATAAATGTGAGATTTGCGGTTTTCGTTCTACTTCTTCTTATTACATTGATAATCATGTGAGGTTGGTTCATCGCAAAGAGCGACCTTACCAATGTCACTACTGTGGTCATCGAGCGGGTCTAAAGGGAGCTCTTTCTCACCATATTAAGGCAGTTCATATGAAGATAAAACCCTTTAAATGTCCACTTTGCAGCTATCGTGCGGCTCGTAATAGTGCTATGAATGTCCATATTACTTTAGTCCATAAAAAAGAACTTCAGTATAAATGTCCTCACTGTGATTTTAGAACGGCTATAAAGGTTGGAGTCGCAACTCACATGAGACTGATCcataatcaagaaaataatcaCGTTTGTGATCACTGTGGATATCGCAGCTTTTCAAAGGCCGGTGTTAGGAATCACATTAGTGCAGTTCACCTGCTTCGTAGACCTTATAAATGTACTCATTGCAGTCTTAGATTCGGTAGGAAAAACACCCTTAAAACCCATATTAAGAATATTCATTGTTACGGTCAAGAGCGACCTTACCAATGCCACTACTGTGGTTATCGAGCGGGTGTAAAGGGTTCTCTTTCTCTGCATATTACGGCTGTTCATATGAAGATCAAACCTTTTAAATGTCCACATTGCAGCTATCGTTCGGCTCGTAAAGTAGCAATAAAAGAGCACATCAATTCCGTCCATAAGAAAGACATCGTCGGCATAAATttccCTTTCTTCTCTCGTCTTTCTTCTTTTATGCAATGTTTATTTGATAATCAAATTAACCctgttgcttccgagcataccgaagtgAATGTAGTGATCAAAAAGGATATTAAGGATTCATCATTCAATTACATCATTTTATCATCCTCTAATGATTTAACTTCATCATCAGAGGATGATGAAGTTAAACCGATTGGCTTTAATGGAACCAGCAATGAATTTAAGAATTCTTTTCACAAACATTCTTCTCTTTCTGGCGGTACTTTGCAAATATCTTCCAGATTTAGCCTAAACCAAAGTATTGAAGTCAAAGTTGAAACTGTGAACTGTAAAGAAGAATGTGATCCATCTTCATCAAGTGGTGATAATTTAGAATCACCTTCTAATGATGCAAGTTCTTCTTTGGACGAATTTGATGAAACTAATGTGGAATTGAAGAAACCCAAAAAAGAATTGTATGAGGATGCGGCCCAATTATCTTCTAATGTTAGATGCACTTCTAATGATGAATGTGATAATTCTACTGCATCTAATGGAAGCTTGAACTTTTCAACGTTAGACACAATTTTCAGTGAAATGATGGGTTACATGAAAAGTTGTAAACTAGACCTCAAGCCAATAGATGTTAACTTCGGCAATGAGGAGATCAAGGAAAATTTGTCAATTTGTGATGAAACTAACGATTTCAGTTTGTTGCGCAGTGATTTCTCCGAAGGTGAAATTGCTTATATGAAAAGTTGTAAAATTGTACTCAAACCTACTGATGTTACCTCTAGCAAAGAGGATGTCAAGGAAAATCGGTCAATTTGTGATAAAAATAACGATTGCAGTTTGTTGCAAAGTGATTTTTCTGAGGGTGAAATTGCTCACATGAAAAGTTGTTTTGTAAAACTcaagaaattaaatgaattaaaagatCAAAAGAATTTTGTATGTCGCCATTGTAAATTCAGTACAGATTCAATAGATACCCTTCGTTTGCATGTGGCCAAAATGCATgttgaatttaaaagttataaatgtcGGTATTGCCACCTTAAATTTAGCCATAGGCTTTTCTTGCGTGAACATTACGTTGAGAAACATGAGGATGTGATGccttataaatgttttcattgCGTATATAGTTGTTCATCCAAATGGCATATGAATGAACATATATATACTGTACatttgaaggaaaaaaaatttaaatgtcataTTTGTAAATCTAGATTTTCTAGAATATGGGGATTAAACAATCATATGAAGTTTgctcatttgaaaataaaaccatttaaatgcCCTAATTGTCCTTTCACAGGTGTTTACAAGAGTCATATTAATTCCCATTGGAAAAgagttcatttaaaaattaaaaactacaaatGTTCTCTTTGTAAAAAGGCATTTTTCTCTATGAATCAAATGCAGAGGCATTTTAATTCTCTTCATGTTAATAATACTCAAGTGAAAATAAAACCTTATCAATGTGAGATTTGTGGTTTACGTTTTGCTGCTTCTTATCACATCGATAATCATGTGAGGTTGGTTCATCGTAAAGAGCGACCGTACCAATGCCACTACTGTGGTCATCGAGCGGgtgaaaaaagttatatttctctgcATATTAAGGCAGTTCATATGAAGATCAAACCCTTTAAATGTTCGCTTTGCAGCTTTCGTGCATTTAGTAAAGGAAGTATTAAAGACCATGTTACTTTAGTCCATACAAAAGAACGTCCGCATAAATGTCCGCACTGTGATTTTAGAGCGGCTGTAAAAGGTATAGTCACAACTCACATTAGAATAGTCCATAATCAAGAAAAGGATCACGTATGTGATCACTGCGGACTTCGTTTCCATTCTAAGGGCCATATTAGGCTTCACATTAGTGAAGTTCACCTGCTTCGTAAACGTAAACCTTATAAATGCACTCATTGCAGTCTTAAATTCCGTTGGAAAGACACTCTTAAAGGCCATATTAAGAAAGTTCATCCAGAAAATGATCTTTAG
- Protein Sequence
- MKDSSLNYKIITSSSEDDEVGSIGFKGTNDEFKNSFNEQYSSLSGDTLQISSRFNLNQSIEVKVETVNCKEECDPSSSSGDNLESPNDAISSSDEFDETNVEMKEPKTEWYEAAAQSSSDVSCTSNDECDNSTESDGILNLSTLDTLFGEMMDYMKSCKLEIKPIDLNFSDKEIKENWSICDKNNDFSLLQSDFSEGEVAYMKSCKIVLSPIDVNSSKEDVKEYENDDYSLLQSDFSEGEIAYMKSCRIVLKPVGVNFSDEGDEENWSICDENNDNSSLQRDISEGELPYMKRCFVKLKKLNELKEPVRYLVCPHCKFSTKSIDALRLHITKMHAEFKGYTCRHVRNVHRKERPYQCHYCGHRTGLKGSLTQHIKVVHMKIKPFKCPLCSYRAPRNNAMKFHITSVHEKAFFDKFGLQKHINSIHDNTHVEIKPYKCEICGFRSTSSYYIDNHVRLVHRKERPYQCHYCGHRAGLKGALSHHIKAVHMKIKPFKCPLCSYRAARNSAMNVHITLVHKKELQYKCPHCDFRTAIKVGVATHMRLIHNQENNHVCDHCGYRSFSKAGVRNHISAVHLLRRPYKCTHCSLRFGRKNTLKTHIKNIHCYGQERPYQCHYCGYRAGVKGSLSLHITAVHMKIKPFKCPHCSYRSARKVAIKEHINSVHKKDIVGINFPFFSRLSSFMQCLFDNQINPVASEHTEVNVVIKKDIKDSSFNYIILSSSNDLTSSSEDDEVKPIGFNGTSNEFKNSFHKHSSLSGGTLQISSRFSLNQSIEVKVETVNCKEECDPSSSSGDNLESPSNDASSSLDEFDETNVELKKPKKELYEDAAQLSSNVRCTSNDECDNSTASNGSLNFSTLDTIFSEMMGYMKSCKLDLKPIDVNFGNEEIKENLSICDETNDFSLLRSDFSEGEIAYMKSCKIVLKPTDVTSSKEDVKENRSICDKNNDCSLLQSDFSEGEIAHMKSCFVKLKKLNELKDQKNFVCRHCKFSTDSIDTLRLHVAKMHVEFKSYKCRYCHLKFSHRLFLREHYVEKHEDVMPYKCFHCVYSCSSKWHMNEHIYTVHLKEKKFKCHICKSRFSRIWGLNNHMKFAHLKIKPFKCPNCPFTGVYKSHINSHWKRVHLKIKNYKCSLCKKAFFSMNQMQRHFNSLHVNNTQVKIKPYQCEICGLRFAASYHIDNHVRLVHRKERPYQCHYCGHRAGEKSYISLHIKAVHMKIKPFKCSLCSFRAFSKGSIKDHVTLVHTKERPHKCPHCDFRAAVKGIVTTHIRIVHNQEKDHVCDHCGLRFHSKGHIRLHISEVHLLRKRKPYKCTHCSLKFRWKDTLKGHIKKVHPENDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -