Glac051266.1
Basic Information
- Insect
- Gerris lacustris
- Gene Symbol
- -
- Assembly
- GCA_951217055.1
- Location
- OX578286.1:6107845-6110514[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0058 0.97 11.6 1.0 2 23 312 334 311 334 0.95 2 19 0.022 3.6 9.8 7.9 1 23 340 363 340 363 0.93 3 19 0.1 17 7.7 5.9 1 23 369 392 369 392 0.95 4 19 0.082 14 8.0 4.1 1 23 398 421 398 421 0.93 5 19 0.03 4.9 9.4 0.2 1 23 427 450 427 450 0.97 6 19 0.00043 0.071 15.2 0.8 1 22 456 477 456 481 0.94 7 19 0.21 35 6.7 1.5 1 23 491 514 491 514 0.97 8 19 0.00062 0.1 14.7 2.5 1 23 520 543 520 543 0.98 9 19 1.6 2.7e+02 3.9 0.4 1 23 549 572 549 572 0.87 10 19 2.2 3.6e+02 3.5 0.8 2 23 583 605 582 605 0.92 11 19 0.00018 0.03 16.3 3.7 1 23 611 634 611 634 0.97 12 19 0.0062 1 11.5 0.5 1 23 644 667 644 667 0.96 13 19 0.022 3.6 9.8 2.2 1 23 673 696 673 696 0.96 14 19 0.0095 1.6 10.9 0.1 1 23 702 725 702 725 0.95 15 19 0.012 2 10.6 0.3 1 23 731 754 731 754 0.97 16 19 0.037 6.1 9.1 1.1 1 23 760 783 760 783 0.92 17 19 0.00023 0.038 16.0 4.2 1 23 789 812 789 812 0.97 18 19 0.011 1.8 10.8 0.3 1 23 820 843 820 843 0.92 19 19 0.003 0.49 12.5 0.9 1 23 849 872 849 872 0.97
Sequence Information
- Coding Sequence
- ATGAAGGATTCATCactcaattataaaattataacttcatcATCAGAAGATGATGAAGTCGGATCGATTGGTTTTAAAGGAACCAACGATGAATTTAAGAATTCTTTTAATGAACAGTATTCATCTCTTTCTGGCGATACTTTGCAAATATCTTCCAGATTTAACCTTAACCAAAGTATTGAAGTCAAAGTTGAAACTGTGAACTGTAAAGAAGAATGTGATCCATCTTCATCAAGTGGTGATAATTTAGAATCACCTAATGATGCGATTTCTTCTTCGGACGAATTTGATGAAACTAATGTGGAAATGAAGGAACCAAAAACAGAATGGTATGAGGCAGCGGCCCAATCATCTTCCGATGTTAGTTGCACTTCTAATGATGAATGTGATAATTCTACTGAATCTGATGGAATCTTGAACTTGTCAACGTTAGACACGCTTTTCGGTGAAATGATGGATTACATGAAAAGTTGTAAACTAGAAATTAAGCCAATAGATCTTAACTTCAGCGATAAGGAAATCAAGGAAAATTGGTCAATTTGTGATAAAAATAACGATTTCAGTTTGTTGCAAAGTGATTTCTCTGAGGGTGAAGTAGCTTACATGAAAAGTTGTAAAATTGTACTCAGTCCTATAGATGTTAACTCTAGCAAAGAGGATGTCAAGGAATATGAAAATGATGATTACAGTTTGTTGCAAAGTGATTTTTCTGAAGGTGAAATTGCATATATGAAAAGTTGTAGAATTGTACTCAAGCCCGTTGGTGTTAACTTCAGCGATGAGGGTGATGAGGAAAATTGGTCAATTTGCGATGAAAATAACGACAACAGTTCATTGCAAAGAGATATCTCTGAAGGGGAACTCCCTTACATGAAACGTTGTTTTgtaaaactcaaaaaattaaatgaactgAAAGAACCCGTACGTTATTTAGTATGTCCCCATTGTAAATTCAGTACAAAGTCAATCGATGCCCTTCGTCTGCATATTACCAAAATGCATGCTGAATTTAAAGGTTATACATGTCGGTATTGCGACCTTAAATTCAGCCATAAACATTACCTGCATGAACATTATGCTGAGAAACATGAGGATGTGATGCCTTATAAATGTTTTCACTGCGTATTTAATTGTTCATCTAAATTTGATCTGAAAGTACATATAAATTTTGtacatttaaacaataaaaagtttaCATGTCATATTTGTAAATCTAGATTTACTAGAGAAACAGATTTAAACTTTCATACAAAATATGctcatttgaaaattaaaccatttaaatGCCCTAAATGTCCTTTCACAGGTGTTCTCAAGGGTGTAGTGAATAGGCATATGAAAAgggtacatttaaaaattaaaaactacaaatGTTCTCTTTGTAAAAAGGCATTTTTTGATATGATTGGATTGCGGAAACATATGAATTCTAATTCTGTACATGTTAAAAGGCATGTGAAAATAAAGCCTTATAAATGTGAAATGTGCAGTTTTCGTTCTACTTCTTCTTATTTCATTGATAGACATGTGAGGAATGTTCATCGCAAAGAGCGACCTTACCAATGTCACTACTGTGGTCATCGAACGGGTCTAAAGGGATCTCTTACTCAGCATATTAAGGTGGTTCATATGAAGATCAAGCCCTTTAAATGTCCACTTTGCAGCTATCGTGCGCCTCGTAATAATGCTATGAAATTCCATATTACTTCAGTCCATGAAAAAGTACGTCGGCATAAACGTCCAATTAAATGCCCTAAATGTCCCTATGAACATATTCTTAGAGGTAAAgtcaataaacatataaaaagggttcatttaaaaattaaaagacacaaatgttctttttgtaaaaaggCATTTTTCGATAAGTTTGGATTGCAGAAACATATTAATTCTATACATGATAATACGCATGTGGAAATAAAACCTTATAAATGTGAGATTTGCGGTTTTCGTTCTACTTCTTCTTATTACATTGATAATCATGTGAGGTTGGTTCATCGCAAAGAGCGACCTTACCAATGTCACTACTGTGGTCATCGAGCGGGTCTAAAGGGAGCTCTTTCTCACCATATTAAGGCAGTTCATATGAAGATAAAACCCTTTAAATGTCCACTTTGCAGCTATCGTGCGGCTCGTAATAGTGCTATGAATGTCCATATTACTTTAGTCCATAAAAAAGAACTTCAGTATAAATGTCCTCACTGTGATTTTAGAACGGCTATAAAGGTTGGAGTCGCAACTCACATGAGACTGATCcataatcaagaaaataatcaCGTTTGTGATCACTGTGGATATCGCAGCTTTTCAAAGGCCGGTGTTAGGAATCACATTAGTGCAGTTCACCTGCTTCGTAGACCTTATAAATGTACTCATTGCAGTCTTAGATTCGGTAGGAAAAACACCCTTAAAACCCATATTAAGAATATTCATTGTTACGGTCAAGAGCGACCTTACCAATGCCACTACTGTGGTTATCGAGCGGGTGTAAAGGGTTCTCTTTCTCTGCATATTACGGCTGTTCATATGAAGATCAAACCTTTTAAATGTCCACATTGCAGCTATCGTTCGGCTCGTAAAGTAGCAATAAAAGAGCACATCAATTCCGTCCATAAGAAAGACATCGTCGGCATAAATGTCAGTTCTGTGATTGTAGAACGGCAATAA
- Protein Sequence
- MKDSSLNYKIITSSSEDDEVGSIGFKGTNDEFKNSFNEQYSSLSGDTLQISSRFNLNQSIEVKVETVNCKEECDPSSSSGDNLESPNDAISSSDEFDETNVEMKEPKTEWYEAAAQSSSDVSCTSNDECDNSTESDGILNLSTLDTLFGEMMDYMKSCKLEIKPIDLNFSDKEIKENWSICDKNNDFSLLQSDFSEGEVAYMKSCKIVLSPIDVNSSKEDVKEYENDDYSLLQSDFSEGEIAYMKSCRIVLKPVGVNFSDEGDEENWSICDENNDNSSLQRDISEGELPYMKRCFVKLKKLNELKEPVRYLVCPHCKFSTKSIDALRLHITKMHAEFKGYTCRYCDLKFSHKHYLHEHYAEKHEDVMPYKCFHCVFNCSSKFDLKVHINFVHLNNKKFTCHICKSRFTRETDLNFHTKYAHLKIKPFKCPKCPFTGVLKGVVNRHMKRVHLKIKNYKCSLCKKAFFDMIGLRKHMNSNSVHVKRHVKIKPYKCEMCSFRSTSSYFIDRHVRNVHRKERPYQCHYCGHRTGLKGSLTQHIKVVHMKIKPFKCPLCSYRAPRNNAMKFHITSVHEKVRRHKRPIKCPKCPYEHILRGKVNKHIKRVHLKIKRHKCSFCKKAFFDKFGLQKHINSIHDNTHVEIKPYKCEICGFRSTSSYYIDNHVRLVHRKERPYQCHYCGHRAGLKGALSHHIKAVHMKIKPFKCPLCSYRAARNSAMNVHITLVHKKELQYKCPHCDFRTAIKVGVATHMRLIHNQENNHVCDHCGYRSFSKAGVRNHISAVHLLRRPYKCTHCSLRFGRKNTLKTHIKNIHCYGQERPYQCHYCGYRAGVKGSLSLHITAVHMKIKPFKCPHCSYRSARKVAIKEHINSVHKKDIVGINVSSVIVERQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -