Basic Information

Insect: Gerris lacustris
Gene Symbol: -
Assembly: GCA_951217055.1
Location: OX578276.1:146613105-146615453[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00023 0.039 16.0 3.5 1 23 302 324 302 324 0.97

2 9 0.008 1.3 11.2 1.5 1 23 334 356 334 356 0.97

3 9 0.0011 0.19 13.8 0.4 2 22 409 429 408 431 0.84

4 9 0.00024 0.041 15.9 2.6 3 23 518 538 518 538 0.99

5 9 2.6e-06 0.00043 22.2 1.0 1 23 544 566 544 566 0.98

6 9 4.1e-06 0.00068 21.5 2.2 1 23 572 595 572 595 0.96

7 9 4.4e-07 7.3e-05 24.6 0.7 1 23 601 623 601 623 0.99

8 9 0.004 0.66 12.1 3.2 1 23 629 651 629 651 0.98

9 9 1.2e-06 0.0002 23.2 2.2 1 23 657 679 657 679 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00023	0.039	16.0	3.5	1	23	302	324	302	324	0.97
2	9	0.008	1.3	11.2	1.5	1	23	334	356	334	356	0.97
3	9	0.0011	0.19	13.8	0.4	2	22	409	429	408	431	0.84
4	9	0.00024	0.041	15.9	2.6	3	23	518	538	518	538	0.99
5	9	2.6e-06	0.00043	22.2	1.0	1	23	544	566	544	566	0.98
6	9	4.1e-06	0.00068	21.5	2.2	1	23	572	595	572	595	0.96
7	9	4.4e-07	7.3e-05	24.6	0.7	1	23	601	623	601	623	0.99
8	9	0.004	0.66	12.1	3.2	1	23	629	651	629	651	0.98
9	9	1.2e-06	0.0002	23.2	2.2	1	23	657	679	657	679	0.97

Sequence Information

Coding Sequence: atGGATCCGATGGTTAGTAGGTCAGCAGACCTCCTACCACCGGTCACTATGGATCCAAGACTCCACGGTTGTAAACCTCATCACAGCGATATTTTGCACGGTCCGGATAACGGAGACACACATGAAATGCTCAACGCCCAATATATAAATCTGCACAGGCTTCCTGACAGTCTTCCCTTGCCTAAAGTTCAGTTGGACAGCCTTTCTAACGACTTACTGGGCCACCATGTAGTTGAAATTCCCCAGCCCGGTACTATAGTGTCTCCTAACGGTGCCACTGGTTATTATGAGGAGGATTTGTTGACCACTGATTTGGTAGAAGACAAAAGACTGGCTGCAGCGCTTGTCGCAGTCCAGTTGGTTAGTACAAAGCCAAATCCCTTATTGACGTCAGAACTATTGAACACTAAAAGTATGGCGCCATTATCACCTTTTAATCCTACACCTGTTGAAAAACCAGGAATGGCAGCTATGGTTACAAGTTATATCCAGGCTTTTGAGGATGAGACAGCCGCTCAACATCTTTTGGAACCTCCACACCAACCTTCTGATCGGAAGATGTATTCACCTGCCCCGCAGCAGCTTACTGATGTACGTCTCCCTCCACTTCCTCCTCTTAAAAAGGTACTTTCGACCCAGAATCTCCTGCGCAACCAGTCCAAGAAAAATTATCTTGATCAGCAGTTAGATCCTGAAATGGTGAAAAACTGTGTGGAAGACAACCTTAAACTTGCAAAGATGGACGACGTGGACACCTCAATAGAAGAGCCTTGTTTAGACGATATGGATTCTGATTATGAAATTGACAGTGATTTGAAACCTTCACGCAGAAGTCTTCCTCACAAAAAGAGAATTCCTAGGAAGCTTAAAACACAGCCGCAGAGGAACATCCATTCAAAGTGTTACAAATGCCAGAAATGCGGAGATTCATTTTCAAATCAGTCCTCTTTTTTCAACCATCGCTCTCAGCACTCTAACCCTCCAAAAAGAtcgaatacttttttttgtgaaatttgtcCCTTTCAGAGCTCTAACCAGATGCAATTTTTCGAACACTTAAAAACTCATTACGAGCCTAAAAATGCAGTAGAATCTGTTATACAGACTGATCTCCAAGCTTTTAACGATGCCAGTGTCCCCAATCTTGTTGACTCTTTCAATATGAAACCAGATGACATGACTGAAAGACATAAAAATATCGATAACTCAGCGAATGTACCTGTTACGTGCGAACATTGTGGGAAAGTGTTTAGTAGGCAGAGGATATATGAGGCTCACAAAGCTTTGGTGCATCCTCCTACCATGGAGGAGTTCAGTGAACCTGAAGACATGATGGAGGGAATCAGACATGTTGTCAACATTCAGGCTGGATGTCCTGATGATGAAAACGACGAGAAGCAGATGAGATCTTGGAAAGAGCTCGGTGCATTGCAGAACAATGTCACCACCAGTACCCCTGAAAAATCCTCAGCCCAGTCTGACAGTTTTGAAGAATCTCCTCCTAACAATGCCGGCACGTctaagaaaaaaaccaaaagaaagGAGTTAGGATGTCCTCATTGTCCCAGAGTGTTCATACATAGGACATCTCTATTATACCACGTCAGATCCCACACAGGAAGGAGACCTCATCAGTGCGACGTCTGCGGCAAGAGTTTTTTTGCCAACAACGCTCTTAAAGTACACATGAGGATGCATTCAGGAGACAAACCTTACAAGTGTGAAACATGCGGTAGATGTTTCAGACAATGGGGAGACCTCAAGTACCATGTCACTTCTCTTCATTCGACTCAGAAACAGTATCAGTGTGAATTCTGTGGTAAAGACTTTGCTCGTAAATACTCTTTAATTGTACACAGGCGAATTCATACAAACGAGAAAAATTATGTCTGCGAATTCTGTTGCAAGACTTTCCGTGCTTCTTCCTACTTGGTTAACCACAGACGTATCCACACAGGTGAGAAACCTCACTCATGTGATATTTGTAACAAAGCTTTTAGAGTCAAATCGGATCTTAAAAGGCACCGTGCAACTCACAATAAGATGAGAATCCTGCCGACTTCTTCTATGGTTGTACAAAGTCAGCAAACTGCTCCTACCAACATGGTCGGACAGCTTACTAATCATCAAACTGTAGAACATCCAGCTGAAGCTCTGATGACAACCCAGGTTAATTCTAACGATTCCGACTGTATTCTTCCTGATGTTTCTACTGCTCCCCTCAACCTAATGAGATCTGATCCAACTGACGGGCTTACCTACACCAGAGAAAGTATCACTCTCGATAGGGACCAAAGTACTCTTTACGTGTGGCTTCCTGCAGGAGCTGACTCCATACTcccagattaa
Protein Sequence: MDPMVSRSADLLPPVTMDPRLHGCKPHHSDILHGPDNGDTHEMLNAQYINLHRLPDSLPLPKVQLDSLSNDLLGHHVVEIPQPGTIVSPNGATGYYEEDLLTTDLVEDKRLAAALVAVQLVSTKPNPLLTSELLNTKSMAPLSPFNPTPVEKPGMAAMVTSYIQAFEDETAAQHLLEPPHQPSDRKMYSPAPQQLTDVRLPPLPPLKKVLSTQNLLRNQSKKNYLDQQLDPEMVKNCVEDNLKLAKMDDVDTSIEEPCLDDMDSDYEIDSDLKPSRRSLPHKKRIPRKLKTQPQRNIHSKCYKCQKCGDSFSNQSSFFNHRSQHSNPPKRSNTFFCEICPFQSSNQMQFFEHLKTHYEPKNAVESVIQTDLQAFNDASVPNLVDSFNMKPDDMTERHKNIDNSANVPVTCEHCGKVFSRQRIYEAHKALVHPPTMEEFSEPEDMMEGIRHVVNIQAGCPDDENDEKQMRSWKELGALQNNVTTSTPEKSSAQSDSFEESPPNNAGTSKKKTKRKELGCPHCPRVFIHRTSLLYHVRSHTGRRPHQCDVCGKSFFANNALKVHMRMHSGDKPYKCETCGRCFRQWGDLKYHVTSLHSTQKQYQCEFCGKDFARKYSLIVHRRIHTNEKNYVCEFCCKTFRASSYLVNHRRIHTGEKPHSCDICNKAFRVKSDLKRHRATHNKMRILPTSSMVVQSQQTAPTNMVGQLTNHQTVEHPAEALMTTQVNSNDSDCILPDVSTAPLNLMRSDPTDGLTYTRESITLDRDQSTLYVWLPAGADSILPD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00743039;
90% Identity: iTF_00743039;
80% Identity: -