Glac018993.1
Basic Information
- Insect
- Gerris lacustris
- Gene Symbol
- -
- Assembly
- GCA_951217055.1
- Location
- OX578277.1:58518965-58520230[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00011 0.019 17.0 0.4 1 19 17 35 17 38 0.94 2 11 0.00014 0.024 16.7 0.6 1 23 82 107 82 107 0.95 3 11 0.00017 0.028 16.5 1.1 1 23 150 173 150 173 0.96 4 11 0.06 10 8.4 1.6 1 23 178 200 178 200 0.96 5 11 0.025 4.2 9.6 2.0 1 17 206 222 206 226 0.91 6 11 9.4e-05 0.016 17.3 3.3 1 23 246 268 246 268 0.98 7 11 5.3e-05 0.0087 18.0 0.7 1 23 274 296 274 296 0.98 8 11 0.00033 0.056 15.5 6.7 1 23 302 324 302 324 0.95 9 11 3.1e-05 0.0051 18.8 0.9 3 23 337 358 336 358 0.96 10 11 2.4e-07 4e-05 25.4 1.2 1 23 364 386 364 386 0.98 11 11 1.8e-07 2.9e-05 25.8 7.5 1 23 392 414 392 414 0.98
Sequence Information
- Coding Sequence
- ATGGAAGACATATTTTATGAACAAACAAATGAATTACCTTCATATGATTATCCTTGTCCTAACTGTGATAGAACATTCACAACAGCAGCTGGTGTTAAGCGCCATTCTCACAAATGTGATCCAAATTTAAGAGCTTTAGAAGAAGCAATTGATGAAATGGATCAAAAGACGGGTTCTATAAGTGCAACATGCTTTTGCTGTGGGGAAGACTTGGACTGGGAGGGTTACCATTCATCAGGAAGTTATGAATGTTCTATTTCAGGTTGTGGaatgaaatttaagaaaaatatttccctTAAGAGGCACAGATATGTTGTTCATAAAATATCTTGTTTTGAATTTGGCAGCACTTCCGAAAGTTTCATTTTTGGTTGGAATGAAAATATTCAGTCTGAAGATTGCTTTTGCTGTGATGAAAAATTAGATACAGCCCACGTTACAGGATTATATATCTGCCATGAATGTGGCAAGAAGTTTATTGAAAAGTTGTCTATCTCAAAACATATGAGTGTAATGCATAGTAGTAGTAATTTTAATTGTCATGAGTGCCTTGCACAGTGTCCAGATGAAGGTACGTTAAAAAGACATGGAGACACTCACACCAGTAATAAACTTTACAGTTGCACattgtgtaatttaaaattttcttcaaaaaagtaCTTAAGATTCCATAAAATTGAGAatacaagtaataaaaaaagttcaacTCAGGTCTCAGTTAATGAGGATAAACCATTTGTGTGCGAGTTCTGCCGAAGAAGATGTCCTACAAGTGGAGCTTTGAGAAAGCACAGGAGAACTCACACAGGTGAGAGGCCTTATGAATGTGAAACCTGCTACAAGAGGTTCGGTGCTAAAGAAACACTTAACAGGCATGTACGTATCCATACTGGTTTCAAACCCCACTGTTGCCCTATTTGTGATAAAAAATTTGTGCAGCACAATCAACTTAAGTCTCACCTCTTATTTCACTCAGGAAAATCTTCAGCTGAGAAAGCTAAACATGGGTGTAAAATTTGTGGCAAAAGGTTTAGTAGAAAGACCAGGTTAAATGAACATGCAAAGTATGTACACTTAGGATTTACTCCTTTTGAATGTTCTATATGCAATAAGACATTTATAAGAAAGGAAGATCTTAACAGACATTTCAATGTACACACTGGTGTCAAAGCCCACAAGTGCTCTATTTGTAATAAGTGCTTTTCTACTAAGTCTTCACTAAAGACCCACATGCTCACCCACACAAGGAATCAAGAACTGTCTTAA
- Protein Sequence
- MEDIFYEQTNELPSYDYPCPNCDRTFTTAAGVKRHSHKCDPNLRALEEAIDEMDQKTGSISATCFCCGEDLDWEGYHSSGSYECSISGCGMKFKKNISLKRHRYVVHKISCFEFGSTSESFIFGWNENIQSEDCFCCDEKLDTAHVTGLYICHECGKKFIEKLSISKHMSVMHSSSNFNCHECLAQCPDEGTLKRHGDTHTSNKLYSCTLCNLKFSSKKYLRFHKIENTSNKKSSTQVSVNEDKPFVCEFCRRRCPTSGALRKHRRTHTGERPYECETCYKRFGAKETLNRHVRIHTGFKPHCCPICDKKFVQHNQLKSHLLFHSGKSSAEKAKHGCKICGKRFSRKTRLNEHAKYVHLGFTPFECSICNKTFIRKEDLNRHFNVHTGVKAHKCSICNKCFSTKSSLKTHMLTHTRNQELS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00743020;
- 90% Identity
- iTF_00743020;
- 80% Identity
- -