Glac008268.1
Basic Information
- Insect
- Gerris lacustris
- Gene Symbol
- -
- Assembly
- GCA_951217055.1
- Location
- OX578276.1:75895193-75902628[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.86 1.4e+02 4.8 0.0 2 23 123 145 122 145 0.90 2 12 0.0046 0.76 11.9 0.3 5 23 175 193 174 194 0.93 3 12 0.039 6.5 9.0 0.0 2 23 214 236 214 236 0.88 4 12 0.0012 0.19 13.8 3.5 1 23 240 262 240 262 0.98 5 12 1.6e-05 0.0027 19.7 2.3 1 23 269 291 269 291 0.97 6 12 7.7e-06 0.0013 20.7 2.7 1 23 297 319 297 319 0.98 7 12 1.4e-06 0.00023 23.0 0.3 2 23 328 349 328 349 0.98 8 12 1.9e-06 0.00032 22.6 0.3 1 23 355 377 355 377 0.98 9 12 4.6e-07 7.6e-05 24.5 4.3 1 23 383 405 383 405 0.97 10 12 4.5e-07 7.5e-05 24.5 0.2 1 23 411 433 411 433 0.98 11 12 2.4e-05 0.0041 19.1 7.4 1 23 439 461 439 461 0.98 12 12 8.1e-05 0.013 17.5 1.6 1 21 467 487 467 488 0.94
Sequence Information
- Coding Sequence
- ATGTACACCCTTATCATTAAACCTGCCCGTGCCATCAGTACCGAGGTGCAGTTCTGCTTACTTAGCTTTAGTTTACTTCATATTGAATGCAAGATCGAAAAAGAACCACTACTTAATAGCTCACCTGATGCTAGGGTGGAAGAAGCCAACAACTGTATTAAAACTACTCCTCCTGCATCGGACCTTGGTCCAACCAATGGAAAGAAACTGTATGCCCTGAAAGAAAGACGCTTACAGGAGTTTTACAGGGAACAAAGGCTCAACGGTGAAACGAAGAAGGAAATCAAAGAGGAGAGTGAAAGCGAGTGTTCGAGCGATCTTTCTCAGGAGgacaaaaacaataacaacGTGATCAACGGAGCGAAGAGGTGTGGGGAATGCGGCCTGCTATTAGGGAGTCGAGAGGCTCTAACAGCACATGGCCAGGCCGAACATGGCAAGGGCTGTTTAACTGACAGGTCGTCAGAGGTTTCAACCGGATCGCAAATCAGTAACGTTAGTGACTCCCTCGTCCGTATTAAAGAATGTGGGTTGGAATTTACAACCGAAAAAGCGTTGACAATTCACGTCACTACTCATCATTCTTTGTCAGATCTGTCAGAATCACAATGTGCCATCAAAGACACCAGTGGACCGGCGAGGTGCGAAGATTGTGGATTAGAATTCAGTAGCGGAGAGGCACTTGCCGGGCACGGTAAGGCGGCACATGGCAAACCATATACCTGCATGCGATGTTCCAAACAGTTTGTCCACAGGGGACACTGGGCGGCCCATCAAAGGCTTCACATCGAGCCAAAACAGCAGCACCCCTGTTCTCACTGTCCAAAAGTTTTTCTTACCAGAGCGTCACTCAAGGTGCATATTAGAACACATACCGGAGAGAAGCCGTTTCAGTGTACAGATTGCGGTAAACAGTTCAGTCAACTTAGAAACTACAAGTATCACAGATCAGTGCACGAAGGAACTAGAGAGTTCGCGGCAACCTGTCCTGAATGCGGCAAATATTTCAACGATAGGGGGTATCTCAGTTCGCACATGAAGATACACCGTAATAGGAAAGAATATGCCTGCGAGTACTGTGGCAAGAGTTTCAATCAACGTGTTGCGTACAACATGCACGTCAGAATACATACGGGTCTCAAACCTCACTCGTGTCCTCACTGCCCCAAGTCTTTCTCTAGAAAGATGCTTCTAAAACAGCATCTAAGGATACACACAGGCGAGAAGCCTTTCAGCTGTGTCGTCTGCGGAAAGGCCTTCGCCGACAGGTCTAACATGACACTCCACATGAGACTACATTCCGGCGTCAAACCTTATTCTTGCAATCTCTGTTCCAAGGCTTTCACGAAGAAACATCATCTCAAGACTCATATGAACTACCATACCGGTGTGAAGCCTTATTCGTGCGGCAAGTGCGGTCTTAAATTTAGCCAGTCGAGTAACATGAGAACTCACTTCAAAAAGTGCAATGCTCCCTCTCCTACTCCTTCACGGGACACTCTCCCGCAGCCTCCCGAACTCCGTATATCTTCCAGCTCATAA
- Protein Sequence
- MYTLIIKPARAISTEVQFCLLSFSLLHIECKIEKEPLLNSSPDARVEEANNCIKTTPPASDLGPTNGKKLYALKERRLQEFYREQRLNGETKKEIKEESESECSSDLSQEDKNNNNVINGAKRCGECGLLLGSREALTAHGQAEHGKGCLTDRSSEVSTGSQISNVSDSLVRIKECGLEFTTEKALTIHVTTHHSLSDLSESQCAIKDTSGPARCEDCGLEFSSGEALAGHGKAAHGKPYTCMRCSKQFVHRGHWAAHQRLHIEPKQQHPCSHCPKVFLTRASLKVHIRTHTGEKPFQCTDCGKQFSQLRNYKYHRSVHEGTREFAATCPECGKYFNDRGYLSSHMKIHRNRKEYACEYCGKSFNQRVAYNMHVRIHTGLKPHSCPHCPKSFSRKMLLKQHLRIHTGEKPFSCVVCGKAFADRSNMTLHMRLHSGVKPYSCNLCSKAFTKKHHLKTHMNYHTGVKPYSCGKCGLKFSQSSNMRTHFKKCNAPSPTPSRDTLPQPPELRISSSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00743015;
- 90% Identity
- iTF_00743015;
- 80% Identity
- -