Basic Information

Insect: Gerris lacustris
Gene Symbol: su(Hw)
Assembly: GCA_951217055.1
Location: OX578277.1:58524021-58526138[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0025 0.42 12.8 0.4 1 19 95 113 95 116 0.92

2 14 0.0016 0.26 13.4 1.3 1 23 159 184 159 184 0.94

3 14 1.5e-05 0.0025 19.8 1.4 1 23 228 251 228 251 0.97

4 14 0.18 29 7.0 0.6 2 23 257 278 256 278 0.96

5 14 0.00021 0.035 16.1 1.5 1 19 284 302 284 305 0.95

6 14 3.2e-07 5.3e-05 25.0 0.3 1 23 316 338 316 338 0.97

7 14 0.0027 0.44 12.7 1.4 1 23 348 370 348 370 0.98

8 14 3.8e-06 0.00064 21.6 0.7 3 23 378 398 376 398 0.98

9 14 5e-05 0.0082 18.1 1.9 1 23 404 426 404 426 0.98

10 14 0.00031 0.051 15.6 6.7 1 23 432 454 432 454 0.94

11 14 0.0001 0.017 17.1 0.6 2 23 467 489 466 489 0.93

12 14 1.5e-06 0.00025 22.9 0.2 1 23 495 517 495 517 0.98

13 14 4.9e-07 8.1e-05 24.4 1.7 1 23 523 545 523 545 0.98

14 14 9.9e-07 0.00016 23.5 2.0 2 23 552 574 552 574 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0025	0.42	12.8	0.4	1	19	95	113	95	116	0.92
2	14	0.0016	0.26	13.4	1.3	1	23	159	184	159	184	0.94
3	14	1.5e-05	0.0025	19.8	1.4	1	23	228	251	228	251	0.97
4	14	0.18	29	7.0	0.6	2	23	257	278	256	278	0.96
5	14	0.00021	0.035	16.1	1.5	1	19	284	302	284	305	0.95
6	14	3.2e-07	5.3e-05	25.0	0.3	1	23	316	338	316	338	0.97
7	14	0.0027	0.44	12.7	1.4	1	23	348	370	348	370	0.98
8	14	3.8e-06	0.00064	21.6	0.7	3	23	378	398	376	398	0.98
9	14	5e-05	0.0082	18.1	1.9	1	23	404	426	404	426	0.98
10	14	0.00031	0.051	15.6	6.7	1	23	432	454	432	454	0.94
11	14	0.0001	0.017	17.1	0.6	2	23	467	489	466	489	0.93
12	14	1.5e-06	0.00025	22.9	0.2	1	23	495	517	495	517	0.98
13	14	4.9e-07	8.1e-05	24.4	1.7	1	23	523	545	523	545	0.98
14	14	9.9e-07	0.00016	23.5	2.0	2	23	552	574	552	574	0.97

Sequence Information

Coding Sequence: ATGAAGGGAAAAAGGGCAACAAAGGCGAAAAAAGAAGTTTCacctaataaaaaagtaagtagtCCTGCTAATAAAAGGAGTCCACGTATTAAGAAACTAGAACAAATGTCAAAAACCCCTAAGAAAGGAAAGGCCTCTCCTCAGAAGAACACTATTACTAAGTACATGAAAGTTGCAGAGAAATTAAAAACTcctaagaaagaaaaagttatcaAAAAAGAAGtagtaaaagaagaaattttagaAGAGGACAATGGTCAAGAAGAAACCCCTAAGGATTGCTATCCTTGTCCAACTTGTGATAGGACATTCACAACAGGAGCTGGTGTTAAGCGCCATTCTCACAAATGTGTTCCCAACTCCAAAACATTAGAACAAGCAATTGATGAAATGGAACAAGAATTTGCTGTTAGCAACAAGGCTACTTGTTTCTGCTGTGGTGAAGAGTTAGAGGGATGCCACTTATCTGGTGATTTTGAATGTTCTGTACCTGAGTGTGGGATGAAGTTTAAGCATGAAATCTCTCTTGAAAAGCACAAGCATATTATCCATGAATTTACCAGCCTTGCATTTGGTCCTTCTTCAGAATCTAGTAGTGGTGAGAAGATACTGGTGGTTCAGCAAGATGATGAGTGTTTTTGCTGTGATGAAAAATTAGAGACGGCTCATAATACAGGCATATATGAATGTCACGATTGTGGTAAAAAATTCATTGAAAAATCATCAATCTCAAAGCATGTGAAAGTGATGCATAGTGGTGAGCAGCTGACATGTCCTGAGTGCATGGCCCAATGTCCAGATGAGGGAACTTTTAAAAGACACATTTTTACTCATGCTGGGCAAAAGCCCTACAGTTGTCCATCATGCAAGCAAGAGTTTTCAAGGAAATATCACTTAGTTAGGCACAATATGCAAACCGGTTGCAATGGAACAAGAAAACCTGTTTTCCCTTGTCAGGTATGTGGAAGAGAGTTTAACCGCAAAGACAATTTACGAGAACATTTACGAGCCCATGCAGGTCAGACCAAACGGAAGAAGGTTTTCTCGTGTGACAGGTGTGGCATGGAGTTTTGTGGGACAAAACTTCTCGCTGCTCACAAACGATCTCATACAGGTGAGAAACCTTATGGTTGTGAATTCTGTCCTAAGAGGTTTCCCACTAGCGgagctttaaaaaaacatagaaGGACCCATACTGGGGAAAGACCTTTTGAATGTGATACCTGTCACAAAAGATTTGGAGCCAAAGAAACACTTAATAGACATGTTCGTATCCATACTGGATTTAAACCACACTGCTGTCAGTTTTGTGGTAAAAGATTTGTGCAGTCGTCTCAGCTAAAATCTCACCTTTATTACCACACAGGTCAGTCTGCTATTCAAAACACTGAACCTCTGCCCTGTGAATTCTGTGGTAAGAAGTTTAATAGAAGAGCTAGGCTGAATGAGCACATCAAATTTGTGCACATGGGTGCCAAACCATTTGAATGTCCAACATGTGCAAAGACTTTCATTAGGAAAGAAGATCTTAATAGACATCTCATAATACACACTGGTATTAAAGCACACAAGTGTCCAATCTGTCAGAAGAGTTTTGCTATGAAGTCTTCCCTAAAAGTCCACTTACTTACACATACCAAAGAACCTCCGAGATCTTGTGATGAATGTGGGCGAGCATTCATACGACAGGATTGTCTTCTTAGGCATATGAGGACAAAACATAGAGATACTCTTGAGCAAATTATGTCTGAAACTGAAAAGAAAAAGCTACAGCAACAACTACTCCAAGTTGCTGCTGAAGCCAGTCAGGAGGAGAAGAGAGAACTTAGCGAAGAAGCTCTTTCGGACAGCGTTAGAGAACTTCTGTCACTTTTGGTGGATGAAGCTACTCTTGAATCTTTAGGATACCCTCAGGAATCCGTACACAATCTGTTAGAGGCTGTTATAAGAAGATGTGGACATGAACCTGCTTCAGGTGGGCCAATGGCAGAAAAACTAAGACATAATGTCAAGCTATTATTTACTGTAGTTATTGACGATTCTGCTGTCAAAGCTCTCCTCAACAACCAAACTGTAGATGAAGTCATCTTACATGTCTTGCGACTTGCTAAATCATAA
Protein Sequence: MKGKRATKAKKEVSPNKKVSSPANKRSPRIKKLEQMSKTPKKGKASPQKNTITKYMKVAEKLKTPKKEKVIKKEVVKEEILEEDNGQEETPKDCYPCPTCDRTFTTGAGVKRHSHKCVPNSKTLEQAIDEMEQEFAVSNKATCFCCGEELEGCHLSGDFECSVPECGMKFKHEISLEKHKHIIHEFTSLAFGPSSESSSGEKILVVQQDDECFCCDEKLETAHNTGIYECHDCGKKFIEKSSISKHVKVMHSGEQLTCPECMAQCPDEGTFKRHIFTHAGQKPYSCPSCKQEFSRKYHLVRHNMQTGCNGTRKPVFPCQVCGREFNRKDNLREHLRAHAGQTKRKKVFSCDRCGMEFCGTKLLAAHKRSHTGEKPYGCEFCPKRFPTSGALKKHRRTHTGERPFECDTCHKRFGAKETLNRHVRIHTGFKPHCCQFCGKRFVQSSQLKSHLYYHTGQSAIQNTEPLPCEFCGKKFNRRARLNEHIKFVHMGAKPFECPTCAKTFIRKEDLNRHLIIHTGIKAHKCPICQKSFAMKSSLKVHLLTHTKEPPRSCDECGRAFIRQDCLLRHMRTKHRDTLEQIMSETEKKKLQQQLLQVAAEASQEEKRELSEEALSDSVRELLSLLVDEATLESLGYPQESVHNLLEAVIRRCGHEPASGGPMAEKLRHNVKLLFTVVIDDSAVKALLNNQTVDEVILHVLRLAKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00743014;
90% Identity: iTF_00743014;
80% Identity: -