Glac003842.1
Basic Information
- Insect
- Gerris lacustris
- Gene Symbol
- -
- Assembly
- GCA_951217055.1
- Location
- OX578276.1:19710887-19711246[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.8e-08 7.1e-05 24.1 0.0 14 45 35 66 31 66 0.90
Sequence Information
- Coding Sequence
- ATGGAAAGTTCATCGATTAACAATGTCTTCGATGATTCCGAAGATATTGTGTTCCTAAAAAGATTAGGAAAGTGTGGAGGTCTAGTGAAGCAGCCCTTACTCAACAAAGAAATCAGCAAAAGTAAAGCTGCCAAAATTCACGGGGTACCGAGAATGACGTTATCGGACAAAGCAAGAGGCCGGACACCTGTTAGTCGAAAAATCGATCCGAAACCCATCCTCAGATCCGAACAAGAGCATATACTTGTCGAGTGGATTGTGGCAATGATGAAAAGCGGATTTTTCGTCAGCAAAGAGTGCTTTCAAGATTCCGTGCAAAAGCTAATAAAAGAGCTTGGGATAGATTCTCCCTCTATTTAA
- Protein Sequence
- MESSSINNVFDDSEDIVFLKRLGKCGGLVKQPLLNKEISKSKAAKIHGVPRMTLSDKARGRTPVSRKIDPKPILRSEQEHILVEWIVAMMKSGFFVSKECFQDSVQKLIKELGIDSPSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -