Glac027840.1
Basic Information
- Insect
- Gerris lacustris
- Gene Symbol
- bab1_1
- Assembly
- GCA_951217055.1
- Location
- OX578279.1:25617639-25630995[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-15 8.7e-13 49.4 0.0 1 43 55 98 55 100 0.95
Sequence Information
- Coding Sequence
- ATGCTTGAATCTACTCATGCTTGGCTTGGAGCATCTACATCTTCATTAACAGCAGACAGCTACCAGTATCAGTTGCAGTCGATGTGGCAGAAGTGCTGGAATACCAACCAGAGTCTGGTCCATAACTTAAGGTTTCGCGAGAGAGGTCCCCTGAAGTCTTGGCGTCCGGAGACCATGGCCGAAGCTATCTTAAGCGTTCTCAAGGAAGGTCTTTCACTGTCCCAAGCGGCCAGGAAGTACGACATACCCTACCCGACGTTCGTCCTTTACGCCAACAGAGTGCACAACATGCTCGGACCGTCCGCCGACGGAGGTTCTGATTTGAGGCCAAAGGGCCGAGGGAGACCACAAAGGATCCTGCTAGGTATCTGGCCTGAGGAGCATATCAGAGGTGTCATTAGAGCTGTGGTTTTCAGAGATCCCCAGCATATTAAGGAGGAAACTATTAATCTCTCCTATCCTCGTATGCATgaagcCATTAACTATAGTACATCAAGTGGTAACCCAGGAGGTGCAGGAGGTCCAGTAAACCTCGCATCGACAATGGGTGCTAACATGGGTGGTGGTATGGGCGCAAACCTTGGCATGGGCGGTGGAGGTATGCCAGGATCTCTTGGAGGTGGAATGGGAGGAGGCCTTGCCGGAATGCCCGGTATGGGAGGAGGAGGTAGCAATATGCCTGGAGGAGGTAGCGATGCAGGTGGTGTTAGTCCAAATACAGCAGCAGCAGCTATGGTAGCAGTTGCTCAGGGTCTTCGTCAACAGATGCTAGCAGCACATCATCATCATGGAGGTGGTGATCACCATCTACCACCAGCACCTAGTTATATACCTAGTAATCATCTACTACCTACGCATTCACCTCTAGCTTCTCCTGTAGACTCTTCCCCTACGTCATCACCTAATACTAATATAGATaagCATAATTACAATCTCAGCTCTCAACAACAAGAAAAAATGGATTCTAGATGTCTTAAAAATTCCCTTGCCGACTGGGTCGCACTGAAGGCGATGGGATATAAGCAAGTTTTAAATGACAATGTTAATTCTGCAAGAGCAGATCATCTATTCCAAGATGAAATAGAGGATTTAGTAAAACGACCACAATCTAATGACTCAACCAAGTCTAAGATGGGCGGAGGTGTTGGAATGGGATACAAACCAATTCCCATGGTCACCGACCTTTCGACCAATAGGGCTGAGCACCTCTTTCAAGAGGACATGCAAAGTATTATGAAGAGGGTCCAACAACCCGAGACTcccaaattaaaagTGAGTATGGGAGTAAGTGGTGTTCCCTACAAGAGCGACTGTCAAGGCTACCCGACAGCGCCCTCAAGGACAGAATCGCTATTTCAAGATTCTGAAATCGAAGATCTAGTTAAAAGTCCTCAACCATCCCAGCCCAAGGAGCAACCGATACACATACCTACGATAGACCAGCGTACTGAATAA
- Protein Sequence
- MLESTHAWLGASTSSLTADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAILSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGSDLRPKGRGRPQRILLGIWPEEHIRGVIRAVVFRDPQHIKEETINLSYPRMHEAINYSTSSGNPGGAGGPVNLASTMGANMGGGMGANLGMGGGGMPGSLGGGMGGGLAGMPGMGGGGSNMPGGGSDAGGVSPNTAAAAMVAVAQGLRQQMLAAHHHHGGGDHHLPPAPSYIPSNHLLPTHSPLASPVDSSPTSSPNTNIDKHNYNLSSQQQEKMDSRCLKNSLADWVALKAMGYKQVLNDNVNSARADHLFQDEIEDLVKRPQSNDSTKSKMGGGVGMGYKPIPMVTDLSTNRAEHLFQEDMQSIMKRVQQPETPKLKVSMGVSGVPYKSDCQGYPTAPSRTESLFQDSEIEDLVKSPQPSQPKEQPIHIPTIDQRTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01009462;
- 90% Identity
- iTF_00742703;
- 80% Identity
- -