Glac052912.1
Basic Information
- Insect
- Gerris lacustris
- Gene Symbol
- -
- Assembly
- GCA_951217055.1
- Location
- OX578286.1:40482553-40494366[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.3e-12 2.4e-09 38.4 0.0 2 39 112 150 111 154 0.90 2 4 3.6e-12 2.6e-09 38.2 0.1 1 39 165 203 165 206 0.95 3 4 2e-16 1.4e-13 51.9 0.0 2 43 221 263 220 265 0.95 4 4 2.1e-15 1.5e-12 48.6 0.0 2 44 273 316 272 317 0.93
Sequence Information
- Coding Sequence
- ATGACGGATAGAGGAGTTGATGCAGCCCCGCTAGAACCATCGGATTTAGCAAGACAAGATGCCGAAACACATAGCAACCATGAATATAAcgATGAAGGAGAACcagttaaagtaaaatatgaaacaCTGAGGACTATCGACCAGTCTGAAACCTTGGGACATCTTGATGCATCGcgTGAGAGTTCAGATGTTAAAGATGATCATAATTCAATGCAGACGATGATGATTACACCTGAACTTCTTGGACTACTACCTACTTCTCATGGAGattctgGAGGGAGTGGAGGCAGTGATATGTGTGAAGGATGCCCTAAGCAAAGTAAAAATTGGACAGCCGATGATATGGAAGCAGCTCTAGATGCACTCagaaaccaAGCGATGAGTTTGACAAAAGCCTCATTACATTTTGGTATTCCATCTACGACACTATGGCAGAGAGCACATCGCCTCGGTATTGATACTCCTAAGAAAGACGGACCGGCTAAATCTTGGACTGAAGATTCCCTTAATGTTGCTCTCGATGCTCTAAGATCAGGAACTATCTCCGCTAACAAAGCTAGCAAAGCATATGGTATACCGAGCAGCACACTGTATAAGATAGCAAGAAGAGAAGGTATAAGATTAGCTGCTCCTTTCAATGCTGCACCAACCACTTGGAATCCCGAGGACTTAGAACGAGCTCTTGAAGCTATAAGGTCTGGTCAAACAACAGTTCAGCGTGCTGCAGCTGACTATGGTATACCATCTGGTACTCTTTATGGAAGATGTAAGAGGGAAGGTATTGGTCTTACAAGAAACAACCCTACACCATGGTCTGAACAAGCCATGAATGACGCTTTGGAAGCTGTCAGAATTGGACAAATGAGTATAAATCAAGCTGCTATAAGTTTCAATCTACCTTATTCCTCACTTTACGGCCGTTTCAAACGAGGTAAATTTGACAGTTCAAATGGAAACAACGGCTCGGATGATGAACCACATTCCGAGGGGCCTCCGACATCTCAAACTAATCAAGGACAACCTTCGTCTAACGCTCCAACTCAATCGCAAGCATCGAACGGACCTTCAGCATTGATTCAAGCTGCATTAAGCAGTCCGCCACCTTCTCAACCTCAAATAATGCTGGTTCAATATCAAGCACCAGTACAACCACCagctatacatatgtatacaCAGCCAGCTACATGA
- Protein Sequence
- MTDRGVDAAPLEPSDLARQDAETHSNHEYNDEGEPVKVKYETLRTIDQSETLGHLDASRESSDVKDDHNSMQTMMITPELLGLLPTSHGDSGGSGGSDMCEGCPKQSKNWTADDMEAALDALRNQAMSLTKASLHFGIPSTTLWQRAHRLGIDTPKKDGPAKSWTEDSLNVALDALRSGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWNPEDLERALEAIRSGQTTVQRAAADYGIPSGTLYGRCKREGIGLTRNNPTPWSEQAMNDALEAVRIGQMSINQAAISFNLPYSSLYGRFKRGKFDSSNGNNGSDDEPHSEGPPTSQTNQGQPSSNAPTQSQASNGPSALIQAALSSPPPSQPQIMLVQYQAPVQPPAIHMYTQPAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -