Gbue031407.2
Basic Information
- Insect
- Gerris buenoi
- Gene Symbol
- -
- Assembly
- GCA_001010745.2
- Location
- KZ652178.1:212121-215754[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.097 13 8.0 0.4 2 23 81 103 81 103 0.94 2 9 9.7e-05 0.013 17.4 0.5 1 23 137 159 137 159 0.95 3 9 2.3 3.1e+02 3.7 0.2 2 12 169 179 168 181 0.85 4 9 2 2.7e+02 3.9 5.9 1 19 199 217 199 221 0.83 5 9 0.0049 0.67 12.1 1.7 1 23 227 250 227 250 0.97 6 9 4.8e-05 0.0065 18.4 1.6 1 23 256 278 256 278 0.99 7 9 0.0089 1.2 11.3 0.3 1 19 284 302 284 304 0.96 8 9 0.0028 0.38 12.8 0.6 1 23 335 358 335 358 0.92 9 9 0.00067 0.091 14.8 5.1 1 23 366 389 366 389 0.98
Sequence Information
- Coding Sequence
- ATGAGTGAAAATGGAATCTTCATCAAACAAGACTACGAACACGAACGTTGTGACGGTCTTATGGATATAAGTAATGGTGTTGTTACAGACTCATCTCAGgatgaGGAAATTTTAGAGCCTGAGCTTCGCATAAACCACTGCTTACAGAAAATGGACTAtggattttgtaaaaaatgtaaaactagcCTTTACATGTTAAAAGCGCACGAGGCAGCCTTTCACCGGAATAAAGAGGAGAGACGATGCACCTTCTGCGGACAACTCTACTTGACCAGGTCAAAACTAGTCAAACACATCCTCGAAGCACacgaaactaataatattaagtgCCATTATTGTATGAAAGAAGATTTCGCAGAATTTGAAGAATTGTTTAATCATTTAGAAGAACATGTGttcttacatatatatatctgtCATATTTGTCAAGAATCGTTTGCTCTAAAGAGTAATTTAGACGACCATTTAACAGCACACGTAAGTTCTTGGAAACGTCCGTATTTAGAATGTCCGACTTGTAAAATGAGATTTGATTCTCATAGAAGAGGGGTTCGGATGATGAAAAAACACTGGATCCATGATCATTCTAAACATTTTAAGTGCGTTTATTGCAGTAAAAAATTCAATACATTTGTAGTGTTTTATAATCATTGTTTACGTCATACCAACCAGTTGCCTTACATATGCGACGAATGTGGATTAGGCTTTAGAAAACGTTGTAGAATGAAAGAACATTTAGAAACGACACATCTAAAccaatttaactataaatgttCCGAGTGTCCATTGGAATTTAAACATAAACCGTCGTTTGATGCTCACCTTCGTTCTCACGATGTTTCTTTACGCTTCACTTGCAATTACTGTGCTAAATTATTCATAAGAAAAGTTAGTTTGTTAGATCACTTTGTCGAAAAATCGTGTTCTTTATGTAACGAAGAATTTCATTGTAAAACAATGTTCGATGCTCATTTTGAGCTATACCATAAGAAGGATCGCATGTTCACTTGTGACGAATGTTCCAGGAGTTATGTTCTTGAAAACGCTTTGAAACGTCACAAAACGTTAATGCATCcaaaaagaggggaaaatttatttagatgcaCAATGTGTTCATATGAGACGGTAACTAGACATAATTTAAATCGGCATAAACGAAGGAATCATCAATCCCAATAA
- Protein Sequence
- MSENGIFIKQDYEHERCDGLMDISNGVVTDSSQDEEILEPELRINHCLQKMDYGFCKKCKTSLYMLKAHEAAFHRNKEERRCTFCGQLYLTRSKLVKHILEAHETNNIKCHYCMKEDFAEFEELFNHLEEHVFLHIYICHICQESFALKSNLDDHLTAHVSSWKRPYLECPTCKMRFDSHRRGVRMMKKHWIHDHSKHFKCVYCSKKFNTFVVFYNHCLRHTNQLPYICDECGLGFRKRCRMKEHLETTHLNQFNYKCSECPLEFKHKPSFDAHLRSHDVSLRFTCNYCAKLFIRKVSLLDHFVEKSCSLCNEEFHCKTMFDAHFELYHKKDRMFTCDECSRSYVLENALKRHKTLMHPKRGENLFRCTMCSYETVTRHNLNRHKRRNHQSQ*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -