Gbue039275.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Gerris buenoi
Gene Symbol
-
Assembly
GCA_001010745.2
Location
KZ652887.1:73542-83595[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.015 2 10.6 1.3 1 23 94 117 94 117 0.97
2 16 0.19 25 7.1 0.3 2 23 673 695 672 695 0.93
3 16 0.025 3.4 9.8 3.7 1 22 701 722 701 724 0.90
4 16 4.7e-05 0.0064 18.4 4.4 1 23 743 766 743 766 0.96
5 16 0.0027 0.36 12.9 2.5 1 23 801 824 801 824 0.97
6 16 0.055 7.4 8.8 1.5 1 23 830 853 830 853 0.95
7 16 0.00023 0.031 16.3 2.5 1 23 859 882 859 882 0.95
8 16 0.03 4 9.6 0.5 1 23 890 913 890 913 0.95
9 16 0.015 2 10.6 1.3 1 23 948 971 948 971 0.97
10 16 0.92 1.3e+02 4.9 2.5 1 23 1055 1078 1055 1078 0.90
11 16 0.00018 0.025 16.6 3.3 1 23 1084 1107 1084 1107 0.95
12 16 0.0016 0.21 13.6 4.7 1 23 1115 1138 1115 1138 0.96
13 16 0.007 0.95 11.6 0.4 1 23 1144 1167 1144 1167 0.97
14 16 0.04 5.5 9.2 0.4 1 23 1173 1196 1173 1196 0.97
15 16 0.05 6.8 8.9 2.4 2 23 1203 1225 1203 1225 0.91
16 16 0.0069 0.94 11.6 1.2 1 17 1231 1247 1231 1248 0.96

Sequence Information

Coding Sequence
ATGGATTACACGAAAAGTTTTCAACTAGAGCTCAAGCCGATAGATCTTAACTTTGGCGATGaagaaatcaagaaaaatggTTCGATTTTCgatgaaaataacaataactgttTGTTGCAAAGTGATTTCTCCAAAGGTAGAAAGGGAGATATTTCTGTGCATATTAAGGCAGTTCATATGAAGATCAAGCCCTTTAAATGCCCATTTTGCTGCTATCATGCAGCTCGTAATTGTGCTATTAAAGACCATATTATTGCAGTCCATAAGAAAGAACGTCCGCATAAATGTCCGTACTGTGATTTTAAAGCAGCTAAAAAGGGTGGAGTCACGACTCACATTAGAAAGACCCATAATCAAGAAAAGAATCATACTTCGTGCCACTTCAAAGGGCGCTATTCCCAAGTAGCACAACTTTGTCCCTGGGACATCCACGGGACCAGTGACTTTGTCCCTGGGACATCCACGGGACCAGTCTCTTTGTCCCTGGGACATCCACGGGACCAGTCACTTTGTCCCTGGGACATCCACGGGACCAGTCACTTTGTCCCTGGGACATCCACGGGACCAGTCACTTTGTCCCTGGGACATCCACGGGACCAGTCACTTTGTCCCTGGGACATCCACGGGACCAGTCACTTTGTCCCTGGGACATCCACGGGACCAGTCACTTTGTCCCTGGGACATCCACGGGACCAGTCACTTTGTCCCTGGGACATCCACGGGACCAGTCACTTTGTCCCTGGGACATCCACGGGACCAGTCACTTTGTCCCTGGGACATCCACGGGACCAGTCACTTTGTCCCTGGGACATCCACGGGACCAGTCACTTTGTCCCTGGGACATCCACGGGACCAGTCACTTTGTCCCTGGGACATCCACGGGACCAGTCACTTTGTCCCTGGGACATCCACGGGACCAGTCACTTTGTCCCTGGGACATCCACGGGACCAGTCACTTTGTCCCTGGGACATCCACGGGACCAGTCACTTTGTCCCTGGGACATCCACGGGACCAGTCACTTTGTCCCTGGGACATCCACGGGACCAGTCACTTTGTCCCTGGGACATCCACGGGACCAGTCACTTTGTCCCTGGGACATCCACGGGACCAGTCACTTTGTCCCTGGGACATCCACGGGACCAGTCACTTTGTCCCTGGGACATCCACGGGACCAGTCACTTTGTCCCTGGGACATCCACGGGACCATGAATTTAGTGATTAAAAAGGATATAAAGGATTCATCACTCAATTACATCGTTCTAACATCCTCTGATGATTTAACTTCATCATCAGAGGATGATGAAGTTAAACCGATTGGTTTTAATGGAACTGACGATGAATTTAAGAATTCTTTTAACGAACAGTATTCATCTCTTTCAGGCGGCTCTTTGCAATTACCTTCCAGATTTAAGCTTAACCAAAGTATTGAAGTCAAAGTTGAAACTGTGAAAGAAGAATCTGATCAGTCTTCTAATGATGCAATTTCTTCTTCGGACGAATTTGATGAGACTAATGTGGACTTGAAAGAACCCAAAAAAGAATGGTTTGAGGATGCGGCCCAATCATCTTCCAATGTTAGTCCCACTTTTAATGATGAATGTGATAACTCTACTGAATCTGATGGAATCTTGAACTTGTCAACTTTAGACACGCTTTTCACTGAAATGATGGATTACATGAAAAGTTTTCAACTAGAACTCAAGCCGATAGACTTAAGCGATGAGGGCATCAAGGATAATTGGTCATTTCGTGATGAAAATAACGGTAACAGTTCGTTGCAAAGTGATTTCTCTGAAGGTGAAATTGCTTACATGAAAAGTTGTAAAATTGTTCTCAAGCCTGTAGATGTTAATTTCAGAGATGAGGGCATTGAGGAAAATTGGTCAATTTGCGATGGAAATATTGATATCAGTTCATTGCAAAGAGATATCTCTGAAGGTGAACTTCCTTACATGAAACGTTGTTTTGTAAAActcaaaaaagtaaatgaaCTGAAAGAGCCAGTATGTTGTTTAGTATGCTCCTATTGTAAATTCAGTACGAATTCAATCGATACCCTTCGTCTGCATGCTGCCAAAATGCATGCTGGTTTTAAAGGTTATACATGTCGGCATTGCGACCTTAAATTCAGCCGCAAACTTTTCTTGAACGAACATTATGTTGAGAAGCATCAAGATGTGATGCCTTACACGTGTTCTCATTGCGTTCATCGTAAAGAGCGACCGTACCAATGTCATCACTGTGGTTATCGAACGAGTCGAAAGGAAACTCTCTCCAAACATATTAAGGCAGTTCATATGAAGATCAAGCCCTTTAAATGTCCATTTTGCTGCTATCGTGCGGCTCGTAATTGTGCTATTAAAGACCATATTATTGCAGTCCATACGAAAGAACGTCCGCATAAATGTCCACACTGTGATTTTAGAGTGGCTACAAAGGGTGGAGTCACGACTCACATTAGAAAGACCCATAATCAAGAAAAGAATCACTCTTGTGATCACTGTGGACTTTGTGCCACTTCAAAGGGCGCTATTGGGAAGCACATTAGAGCAGTTCACCTGCTTCGTAGACCATATAAATGCACTCGTTGCAGTCTTAGATTCAGTAGGaaagaaaatcttaaaattcataataagaatattcatttttatggtCAAGAGCGACCGTACCAATGTCACTACTGTGGTCATGGAGCAGGTAGAAAGGGAGATATTTCTGTGCATATTAAGGCAGTTCATATGAAGATCAAGCCCTTTAAATGCCCATTTTGCTGCTATCATGCAGCTCGTAATTGTGCTATTAAAGACCATATTATTGCAGTCCATAAGAAAGAACGTCCGCATAAATGTCCGTACTGTGATTTTAAAGCAGCTAAAAAGGGTGGAGTCACGACTCACATTAGAAAGACCCATAATCAAGAAAAGAATCATGTTTGTGATCACTTGGGCCTTACGCCTACCACATCTACAAGCTCGTTGGTAACTCCAAAGAttgggccaccctgtatatgttgTTCTTCTTGCAGCGCCTCCTCCACCAACACTGCCCTTTTAACAGCTTCCTTCATATCCCCGGGAGGTGTGAAACGCAGCTGCCGACCAGGCTCTCCTCTTAAACCAGATATGAAAGCAGCTAGAATCATTNATAATCAAGAAAAGAATCATGTTTGTGATCACTGTGGGTATCGCAGCTTTTTTAAGTCCCGTGTTAGGGATCACATTAGTGCAGTTCACCTGCTTCGTAGATCTTATAAATGCACTCATTGCAGTCTTAGATTCATTACGAAAGACAAtcttaaaattcataataaGAATATTCATTTTTGTGGTCAAGAGCGCCCGTACCAATGTCATCACTGTGGTTGTCGAGTGGGTACAAAGGATACTCTCTCCAAACATATTAAGGCAGTTCATATGAAGATCAAGCCCTTTAAATGCCCACTTTGCAGCTATCGTGCGGCTCGTAATGATACTGTTAAAAACCATATGACTTCAGTCCATACGAAAGAACGTCCGCATAAATGTCCATTCTGTGATTTTAGAGCGGCTAGAAAGGGTGGAGTCTCAATTCACATTAGAGTGACccataataaagaaaagaagaactCCTGTGATCACTGTGGGTATCGCAGCTTTTCAAAGTCCCATGTTAGGGATCACATTAGTGCAGTTCACCTGCTTCGTAGATCTTATAAATGCACTCATTGCAGTCTTAGATTCATTACGAAAGACAATCTTAAAANcaattaa
Protein Sequence
MDYTKSFQLELKPIDLNFGDEEIKKNGSIFDENNNNCLLQSDFSKGRKGDISVHIKAVHMKIKPFKCPFCCYHAARNCAIKDHIIAVHKKERPHKCPYCDFKAAKKGGVTTHIRKTHNQEKNHTSCHFKGRYSQVAQLCPWDIHGTSDFVPGTSTGPVSLSLGHPRDQSLCPWDIHGTSHFVPGTSTGPVTLSLGHPRDQSLCPWDIHGTSHFVPGTSTGPVTLSLGHPRDQSLCPWDIHGTSHFVPGTSTGPVTLSLGHPRDQSLCPWDIHGTSHFVPGTSTGPVTLSLGHPRDQSLCPWDIHGTSHFVPGTSTGPVTLSLGHPRDQSLCPWDIHGTSHFVPGTSTGPVTLSLGHPRDQSLCPWDIHGTSHFVPGTSTGPVTLSLGHPRDQSLCPWDIHGTMNLVIKKDIKDSSLNYIVLTSSDDLTSSSEDDEVKPIGFNGTDDEFKNSFNEQYSSLSGGSLQLPSRFKLNQSIEVKVETVKEESDQSSNDAISSSDEFDETNVDLKEPKKEWFEDAAQSSSNVSPTFNDECDNSTESDGILNLSTLDTLFTEMMDYMKSFQLELKPIDLSDEGIKDNWSFRDENNGNSSLQSDFSEGEIAYMKSCKIVLKPVDVNFRDEGIEENWSICDGNIDISSLQRDISEGELPYMKRCFVKLKKVNELKEPVCCLVCSYCKFSTNSIDTLRLHAAKMHAGFKGYTCRHCDLKFSRKLFLNEHYVEKHQDVMPYTCSHCVHRKERPYQCHHCGYRTSRKETLSKHIKAVHMKIKPFKCPFCCYRAARNCAIKDHIIAVHTKERPHKCPHCDFRVATKGGVTTHIRKTHNQEKNHSCDHCGLCATSKGAIGKHIRAVHLLRRPYKCTRCSLRFSRKENLKIHNKNIHFYGQERPYQCHYCGHGAGRKGDISVHIKAVHMKIKPFKCPFCCYHAARNCAIKDHIIAVHKKERPHKCPYCDFKAAKKGGVTTHIRKTHNQEKNHVCDHLGLTPTTSTSSLVTPKIGPPCICCSSCSASSTNTALLTASFISPGGVKRSCRPGSPLKPDMKAARIIXNQEKNHVCDHCGYRSFFKSRVRDHISAVHLLRRSYKCTHCSLRFITKDNLKIHNKNIHFCGQERPYQCHHCGCRVGTKDTLSKHIKAVHMKIKPFKCPLCSYRAARNDTVKNHMTSVHTKERPHKCPFCDFRAARKGGVSIHIRVTHNKEKKNSCDHCGYRSFSKSHVRDHISAVHLLRRSYKCTHCSLRFITKDNLKXN*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-