Gbue048390.1
Basic Information
- Insect
- Gerris buenoi
- Gene Symbol
- -
- Assembly
- GCA_001010745.2
- Location
- KZ655192.1:3445-14207[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.021 2.8 10.1 2.0 2 23 182 204 181 204 0.92 2 17 0.026 3.6 9.8 5.5 1 23 210 233 210 233 0.96 3 17 0.12 17 7.7 4.2 1 23 239 262 239 262 0.96 4 17 0.0032 0.43 12.7 1.5 1 23 268 291 268 291 0.97 5 17 0.54 74 5.6 3.1 1 23 297 320 297 320 0.96 6 17 0.036 4.9 9.4 0.9 2 23 328 350 327 350 0.95 7 17 7.8 1.1e+03 2.0 3.2 2 23 357 379 356 379 0.90 8 17 0.0077 1 11.5 0.1 1 23 385 408 385 408 0.95 9 17 5.2 7e+02 2.6 3.0 1 23 413 436 413 436 0.84 10 17 0.0018 0.25 13.4 2.1 1 22 442 463 442 465 0.90 11 17 0.0019 0.26 13.4 0.2 1 23 471 494 471 494 0.96 12 17 1 1.4e+02 4.8 2.0 1 22 500 521 500 523 0.89 13 17 0.065 8.9 8.5 0.2 2 23 530 551 529 551 0.96 14 17 0.0029 0.4 12.8 1.9 1 23 557 580 557 580 0.97 15 17 0.0042 0.56 12.3 0.4 1 23 586 609 586 609 0.95 16 17 0.8 1.1e+02 5.1 4.2 1 23 615 638 615 638 0.97 17 17 0.0091 1.2 11.2 1.2 1 23 644 666 644 666 0.99
Sequence Information
- Coding Sequence
- ATGGAGATGTCTATGGATGAGGATTTCAAGTGTTTCGATGACACAATTTCCATCATAAATAACTCCGACTCTTCACACATAGCTCCAGGTTTTCCTGAGGGTAGCGATGAGTGGATTGTCAAAGCCGAACCTGCTTCCCCGGAAACCACAGATATCAATGAAATCCCAGGTTTGAAGTTAGAATTTGACGTGGATCTGAAAATGACTGTTAAAACAGAAGATACTTGGCCTGCCAGGGATTCTCAACATGTGGAGGAGTGTTCGATGAGTCCGACAGGTTTATTAGAAGAAACATATGAAGTCGATACAGATAGTAAAGACTGGTTTGTAAAAACTGAACCTGCTTCACCTGTCAGGGATACCACGGATGTAGATAATAATCCAGGTTCAGCTAATAATGAGGTGACAGGAAGACACCGGCGCGAGCAGACCACAGGAAGACACCGGCGCGAGCAGACCACAGGAAGACACCGGCGCAGCTCTTACTACCCACACACAGCACGACTACAGTCTGATTCTGTACACaggaaatcaaataataaacagtGTCCACACTGCTTATACAACACCGCCTTCAAGGCTCATCTGAAAAAGCATATTGACgctgttcataaaaaaataaaggcgtTTCGATGTACCAACTGTGAATACAAAACCGACAATAAGTGTCATCTAAAAACACATATCGACTcggtacataaaaatataagggCCTTTCAGTGCCCCCACTGTCAACATAAAACAAACTGGAAGCACGCTTTGGAAAAGCACATAGACTCGGTGCATAAAAGACTAAAGCGATTTCAATGTTCTTATTGTGAATACCGAAGCGGCCGGAAGTCTACTATGAAAATTCACATAGAGTCGtttcatttgaaaatatggGCGTTTCGTTGCACTCGTTGTGAATACAAATCCAACATTAGGGACCACGTGAGAAGACATACTGATACCGTACATCGGAAAATCAAAATAACGTTGCAGTGCCCTTACTGTGAACATAAAACCGACGGGAAATATAAGCTCAGTACCCATATCGATTCGGTACATAAGGAAATAAGGACGCtacagtgccctcactgtgaacATAAAACTCACTGGAAGAACGGATTGAAACTTCACATCGAGTCGGTACATAAAAAAACCAGGGCGTTCCCCTGCCCTCGATGTCCGTACAAGAGTAACAGTAACGCTTATCTTAAAATGCACGTCGAATCGGttcacaagaaaaaaatatttcagtgCCCTTACTGCGAGCATAAAAACTACTGGAAGCAAAACCTTAAAATCCATATCGACTCCGTACATAAGAAAACGAGGGCGTTTGAATGCGCTCACTGTAAGTTTAAAACCGTCCGGAAGAGTAGTCTGAAAAGACATGTCGACGatgtacataagaaaataagggCGTTTCCGTGTCCCGACTGTGACTTTAAAACCAAATGGAAAAGTACTTTGGAAAGACATATCGATTCCGTACATAAGAATACAAGGCCGTTTGAATGCGCCCACTGTGACTATAAAGCCAACTGTAAGGGTACTCTGAGAAAACATATCGGCGCTCTACATATAGAAGTAAGGGCGGTTCAGTGTCCTTTATGCGATTTCAGAACCAAATGGAAGGGTATGTTGAAGAGACACGTCGACGTCCATAAGAAAATAAGGGCGTTTGTATGCGCTCACTGTAAATTCCGAACCGATTTGAAGAGTACTCTGAAAAGACATATTAATGTCGTTCATCGGAAAATAAGGGAATTTCCGTGCTCCGACTGTGAATATAAAACCAAATGGAAGAGCACTCTCACTAGACATATTAACGCTATACATAAGAAAACAAGACCTTTTGAGTGTGCTCACTGTGAATATAAAGCCAACTGTAAGAGTactctgaaaaatcatattgagACTCGACATAAGGAAATGAGAGTGTTTCAGTGTCCTCTCTGTCAATATAAATCCAAATGGAAGGGTATGTTCAATAGACACTTAAGAGTGCATAAGAAAACAAGGGCGTAG
- Protein Sequence
- MEMSMDEDFKCFDDTISIINNSDSSHIAPGFPEGSDEWIVKAEPASPETTDINEIPGLKLEFDVDLKMTVKTEDTWPARDSQHVEECSMSPTGLLEETYEVDTDSKDWFVKTEPASPVRDTTDVDNNPGSANNEVTGRHRREQTTGRHRREQTTGRHRRSSYYPHTARLQSDSVHRKSNNKQCPHCLYNTAFKAHLKKHIDAVHKKIKAFRCTNCEYKTDNKCHLKTHIDSVHKNIRAFQCPHCQHKTNWKHALEKHIDSVHKRLKRFQCSYCEYRSGRKSTMKIHIESFHLKIWAFRCTRCEYKSNIRDHVRRHTDTVHRKIKITLQCPYCEHKTDGKYKLSTHIDSVHKEIRTLQCPHCEHKTHWKNGLKLHIESVHKKTRAFPCPRCPYKSNSNAYLKMHVESVHKKKIFQCPYCEHKNYWKQNLKIHIDSVHKKTRAFECAHCKFKTVRKSSLKRHVDDVHKKIRAFPCPDCDFKTKWKSTLERHIDSVHKNTRPFECAHCDYKANCKGTLRKHIGALHIEVRAVQCPLCDFRTKWKGMLKRHVDVHKKIRAFVCAHCKFRTDLKSTLKRHINVVHRKIREFPCSDCEYKTKWKSTLTRHINAIHKKTRPFECAHCEYKANCKSTLKNHIETRHKEMRVFQCPLCQYKSKWKGMFNRHLRVHKKTRA*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -