Gbue033372.1
Basic Information
- Insect
- Gerris buenoi
- Gene Symbol
- -
- Assembly
- GCA_001010745.2
- Location
- KZ652312.1:24024-34105[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 8.6 1.2e+03 1.9 2.8 1 23 78 101 78 101 0.82 2 16 0.11 14 7.9 0.4 1 23 106 129 106 129 0.88 3 16 0.0031 0.42 12.7 0.3 1 23 135 158 135 158 0.94 4 16 0.0042 0.58 12.3 0.6 1 23 164 187 164 187 0.95 5 16 0.014 1.9 10.7 1.8 1 23 193 216 193 216 0.92 6 16 0.038 5.1 9.3 0.2 1 23 222 245 222 245 0.95 7 16 4.6e-05 0.0063 18.5 2.6 1 23 251 274 251 274 0.95 8 16 0.099 13 8.0 4.6 2 23 280 301 279 301 0.97 9 16 0.0068 0.92 11.6 0.7 2 23 317 338 316 338 0.96 10 16 4.8 6.6e+02 2.7 0.2 3 17 469 483 469 484 0.85 11 16 0.68 92 5.3 2.6 1 23 524 549 524 549 0.92 12 16 0.0013 0.17 13.9 0.5 1 23 555 578 555 578 0.95 13 16 0.0047 0.64 12.1 1.0 1 23 584 607 584 607 0.92 14 16 0.021 2.9 10.1 0.3 1 23 613 636 613 636 0.95 15 16 0.046 6.3 9.0 5.7 1 23 642 665 642 665 0.97 16 16 0.098 13 8.0 1.3 2 23 671 692 670 692 0.97
Sequence Information
- Coding Sequence
- ATGGACGAGAAGATAATTCACAGTCTATCCActcAGAACATTGATAACATTCTCAAAGAGGATGAGTTGAATGAAGAAACACGTAATAAAGATTCATGGATGGAATTCTCTACTCCTGTTTCACTATTTGACGATATTCCGAGTTCACCAAAAGATGGATCGATTAAGACCGAAGATGAATCGGTTAAGACCGAAGATGAATCGATTAAGACCGAAGATGAAAGTGGACTATATGCTTGTGATATGTGTGACTACTCTTCtgattgtaaaagaaaattttcttaCCATATTGCTACAAAACATAGGAAAAAAGCTTTTGTTTGTGAAGAATGCGATTATTCCACTATCAACAAGCATATACTAGATCGCCATACTGCAGCAATGCATTCCGCTATTAAACCATTTGCATGTTCTATATGTGATTATCAAACCTCTCAAAAAGGAAGACTTAAAGCTCATGTTTCGATTAAGCATGATGGTGCTAAACCTTTTGCCTGTAAATTATGTGATTTTTCCACAGCATACAAAGTGAGTTTGAAACTGCATATTAAAGGTAAACATCAGGATTTAAGGCCATTTCAATGTGAGCTTTGTTCATACTCAgcgaagacaaaaaatcatttgtttagTCATGTGGCAGCTAAACACAGTTCTACTAAACCTTACGCTTGCACTCTCTGTGAATACTCAGCAGCACAGAAAATTCATCTTGACGCACATATAGCTTCAAAACACGATGGCCATAAGCGTTTCTCTTGTGAGGAATGTGATTACTGTACTACTAAAAAGAACAATTTGGAAAGACACATGTTGGCTAGACACAGTAACAATGAGATAAAATGTGATAAATGTGAATTTACGTGCAGTACTAAAAGAGGTATAAGCAAACACAAACGATCTCACAATGAAAAGTATAAAACTAAAGCTGCTCCCAAGAAAAAGCTATTATACTGTCACATCTGTGAATTCACTACCATGGACAAGGATGCTCTCAGTAGTCACTTAGCTACTCATGGAAAAACTGAAGAATACCCTACTCAAAAGACAGACGCACCTCCTGTTAGTACACACAATAGCTGGGAAAATATAGATCATGAAATGTTTACTCCTGTCACAGCACTAGATGTAAATGAAAGTCCAAAGGATTCAGAGAGACCAGTTACATGCACAGATTCGTACCCATCTACACCATTGATGCCAAATATCCCATCATTTCAGCCAATTCATAACATCCCTCAGGACCAATctaaaATATTGAATGCTGCTGAGCTCAAATCTAGAGAAGAAACTAATGGATATATGAGAAACCCGTGGTCTGAATATACAACTCCTATGACATTCTTTGACGAGTTTACGTTTGCTAGAGATAAAGACCCAGCCAGCAGTGGTTATACAATACCAGGATGTAAATATTGCGGACATACAACAGGTCTCAAGggtaatttaatgaattatggGATGTCCCATCTCGGGGAAAAGTCATTTCCCTGTGAACAATGTAGTTACACCAGCATACCGAGACAAATAGTAGACAGTCAAATTGAGATGACAAATTCTGCTTCAAAACAGTTTGTATGTTCTCACTTCCAATGTGGTTATCAGACTTCTCATAAAGGAAGATTAGAGTCACATGAAGCAATTAAACACCAGGGTATAAAACCCTACGTCTGTAAGATCTGTAACTTCACAACTGCTTACAAAGTAAGTCTTACTCTACACATCCAAGGAAAGCATCAGGATATGAGACCTTTTCAATGTCAACTCTGTCCATATTCGGCTAAAACTAAAAATCATCTCTTAAATCACGTAGCTGCTAAACATAGTTCTATTAAACCTTTTGCTTGCACTTTATGTGAATATTCTGCAGCTCAGAAGATCCATCTTGATGCTCATATGGCTTCAAAACATGACGGCATTAAAAGGTTTTCTTGTGAGCAATGTAAGTACTCCACTACTAAGAAAACATGCTTAGTCAAACATTTGTACACACGACACAATAAAAACCCTATTAAATGTAAAGAATGTGATTTTGAATCTACCACAGTCAGGCGCATGACATTGCACATGAAGtcacataataaaattaaaactatagaaGCACAAAAAACTCCCGAAAATCAAACTCCTGCTGTACCTGTTTCTACGTAA
- Protein Sequence
- MDEKIIHSLSTQNIDNILKEDELNEETRNKDSWMEFSTPVSLFDDIPSSPKDGSIKTEDESVKTEDESIKTEDESGLYACDMCDYSSDCKRKFSYHIATKHRKKAFVCEECDYSTINKHILDRHTAAMHSAIKPFACSICDYQTSQKGRLKAHVSIKHDGAKPFACKLCDFSTAYKVSLKLHIKGKHQDLRPFQCELCSYSAKTKNHLFSHVAAKHSSTKPYACTLCEYSAAQKIHLDAHIASKHDGHKRFSCEECDYCTTKKNNLERHMLARHSNNEIKCDKCEFTCSTKRGISKHKRSHNEKYKTKAAPKKKLLYCHICEFTTMDKDALSSHLATHGKTEEYPTQKTDAPPVSTHNSWENIDHEMFTPVTALDVNESPKDSERPVTCTDSYPSTPLMPNIPSFQPIHNIPQDQSKILNAAELKSREETNGYMRNPWSEYTTPMTFFDEFTFARDKDPASSGYTIPGCKYCGHTTGLKGNLMNYGMSHLGEKSFPCEQCSYTSIPRQIVDSQIEMTNSASKQFVCSHFQCGYQTSHKGRLESHEAIKHQGIKPYVCKICNFTTAYKVSLTLHIQGKHQDMRPFQCQLCPYSAKTKNHLLNHVAAKHSSIKPFACTLCEYSAAQKIHLDAHMASKHDGIKRFSCEQCKYSTTKKTCLVKHLYTRHNKNPIKCKECDFESTTVRRMTLHMKSHNKIKTIEAQKTPENQTPAVPVST*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00744033;
- 90% Identity
- iTF_00744033;
- 80% Identity
- -