Gbue047452.1
Basic Information
- Insect
- Gerris buenoi
- Gene Symbol
- -
- Assembly
- GCA_001010745.2
- Location
- KZ654576.1:34711-40999[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.41 55 6.0 5.2 1 22 315 336 315 338 0.89 2 13 0.25 33 6.7 0.7 1 23 344 367 344 367 0.95 3 13 3e-06 0.00041 22.2 1.3 1 23 373 396 373 396 0.97 4 13 0.019 2.5 10.2 0.3 1 23 402 425 402 425 0.97 5 13 0.0013 0.17 13.9 4.8 1 23 431 454 431 454 0.98 6 13 0.6 82 5.5 0.1 1 23 460 483 460 483 0.78 7 13 0.0026 0.36 12.9 0.8 1 23 489 512 489 512 0.96 8 13 0.00099 0.13 14.3 0.1 1 23 518 541 518 541 0.97 9 13 0.013 1.8 10.7 2.4 1 23 547 570 547 570 0.97 10 13 0.21 29 6.9 6.3 1 23 576 599 576 599 0.95 11 13 0.0004 0.055 15.5 3.7 1 23 605 628 605 628 0.98 12 13 3.5e-05 0.0047 18.8 5.1 1 23 654 677 654 677 0.98 13 13 2 2.8e+02 3.8 0.1 3 23 685 705 683 705 0.96
Sequence Information
- Coding Sequence
- ATGTCTAATCAAGATCCTGATAGAGATCCTCTAGCATTGAATGTAAAATCTGAACTCATTGATTCAAAAGAGAATATTTGTCAAAATGTAGTTGCATCTTTGAAAAGTGATATTTGCATTTCACCCAATCAAAATATGGATACATtGAATTTAGCGATTAAAAAGGAAATGAAGGACTCATCTCTAAATGACATCTTTTCATCATCCTCTGATGATTCAGCTTCATCATCTTCCGATGATTTAGCTTCATCAACTTCTGATGAGTTAACTTCATCATCCTCTAGGAATGAAGTTCAATCAACTGATTTAAATGGAACCAACgttgaatttaataattcaattaaaaatgaattccaATCTCTTTCTGACGACACTATAAAATTGTCTTCTAGTGTCAGATCCAAGcttcaagaaaattttaaagtcaATGATGAAAATATAAACTGTAAAAAATCTTCATCAAGTGATGATAATTTAGAACTGTCTTCTTATGAAGCAGTTTCTTCTTCGAACAAATTTGATGAAACTAATGTGGAATTGAAGGAACCCAAAAAAGAATGGTATGAGGATGATGCCCAATCATCTTCCAATGATGAATGTGATAATTCTAATTTAGAGTCAAATTTAGACACGCTTTTCAATGAAATGATGGATTACATGAAAAGTTGTAAACTAGAACTCAAGCCGATAGATGTTAACTTCGGCGATGGGGACATCAAAGAAAATTTGTCGATTTCTGATGGAAATAACAATCGCAGTTTGTCTCAAAGTGATTTATCCGATGGTGAAATCGCTAAcatgaaaaattgttttgtaaaacTCGATAAATTAAACGAATCGAAAGAGCAGAAGAATTTCTCATGTTTGTGTTGTAAATTCAGTACGAATTCAATCGATTCTCTCCGATATCATACGACTAAAATGCATGTTGAATTTAAAGGTCATACGTGTAGGTATTGTAAACTTAAATTCagtgataaaattttcttgcaCGAACATTACGTTGAAAAACATCAAGACGTGAGACCTTTTAAATGTTCTTATTGCGTTTTTAATTCTCCGATGGAACAGCATCTTACGGAGCATATAAATGCGgtgcatttaaatataaaaccgtTCGAATGTCATATTTGTAAAACCAGGTTCACTCAACAGGGAGGCTTGAACTTACATATGaaaattattcatttgaaaTTGAAACCGTTTAAATGCCCTAAATGTCCTTTTAAAGCGGGGCGAAAAAGTGCGGTTGATTACCACATGAAAATGGTACATTTGAAAGTTAGAAATTACAAATGCACGCATTGCGAACGCGCATTTTTCAGTTTGCCTATGTTGCACAGCCATATAAAAACCAAGCATATGCAAATTAAACCGTATAAATGTGAGATTTGTGGTTTACGGGCCGCAACTCAATTCGGAGTCGATTTTCACATGAGGAATGTTCATCGCAAAGAGCGACCGTACCAATGTCACTACTGCGGTTATCGAGCGGGTGACAAAAGTTATATTTCTCAGCATATTAAGGCAGTTCATATGAAGATTAAGCCTTTCGATTGTCCTCTTTGCGGATATCGTGCGTCTCGTAAAGAAATGATTAAAGTCCATATCAATACCGTCCATATTAAAGATCGTCGGCATAAATGTCCTCACTGTGATTTTACAACGGCTATAAAGAGTAGTATCTCGACTCACATTAAAATGATCCACGATCGCGAAAAGAATCACACTTGTGATTACTGTGGATATCGCTGCTGTTTGAAGTCGACTATTAGATATCACATTAATGAAGTTCATCTGGTCAATAAACCTTATAAATGCAATCTTTGCAGCGTTAGATTCAGTAGGAAATACTCCGTTAAAGTACATAAACGGAGGTTTCACCCGGGAAATAGCTTTTTAAACTCGACTATTAAAAaccacattaataaaaataaagtacgcCTGGTTAATAAACCTTATAAATGCAACCACTGCAGTATTAGATTCAGCAGGAAATACTCCGTTAAAGTGCATATACGCAGGTTTCACCCGGAAAAAATATCTTTTGGCTGTTCTGAATGTCCGTATCAAGCTGAAAGTATACAATTGttagaaatacataaaaagaagCATCTTcgatga
- Protein Sequence
- MSNQDPDRDPLALNVKSELIDSKENICQNVVASLKSDICISPNQNMDTLNLAIKKEMKDSSLNDIFSSSSDDSASSSSDDLASSTSDELTSSSSRNEVQSTDLNGTNVEFNNSIKNEFQSLSDDTIKLSSSVRSKLQENFKVNDENINCKKSSSSDDNLELSSYEAVSSSNKFDETNVELKEPKKEWYEDDAQSSSNDECDNSNLESNLDTLFNEMMDYMKSCKLELKPIDVNFGDGDIKENLSISDGNNNRSLSQSDLSDGEIANMKNCFVKLDKLNESKEQKNFSCLCCKFSTNSIDSLRYHTTKMHVEFKGHTCRYCKLKFSDKIFLHEHYVEKHQDVRPFKCSYCVFNSPMEQHLTEHINAVHLNIKPFECHICKTRFTQQGGLNLHMKIIHLKLKPFKCPKCPFKAGRKSAVDYHMKMVHLKVRNYKCTHCERAFFSLPMLHSHIKTKHMQIKPYKCEICGLRAATQFGVDFHMRNVHRKERPYQCHYCGYRAGDKSYISQHIKAVHMKIKPFDCPLCGYRASRKEMIKVHINTVHIKDRRHKCPHCDFTTAIKSSISTHIKMIHDREKNHTCDYCGYRCCLKSTIRYHINEVHLVNKPYKCNLCSVRFSRKYSVKVHKRRFHPGNSFLNSTIKNHINKNKVRLVNKPYKCNHCSIRFSRKYSVKVHIRRFHPEKISFGCSECPYQAESIQLLEIHKKKHLR*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -