Gbue039516.1
Basic Information
- Insect
- Gerris buenoi
- Gene Symbol
- -
- Assembly
- GCA_001010745.2
- Location
- KZ652922.1:40468-51114[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.19 26 7.0 3.0 1 23 180 202 180 202 0.97 2 16 0.16 22 7.3 3.7 1 21 210 230 210 231 0.95 3 16 0.69 94 5.3 0.4 3 21 532 550 531 554 0.91 4 16 0.028 3.8 9.7 0.0 2 20 623 641 623 643 0.94 5 16 0.094 13 8.0 0.6 2 20 647 665 646 666 0.93 6 16 0.034 4.6 9.4 5.6 3 23 692 712 691 712 0.97 7 16 0.91 1.2e+02 4.9 0.1 3 23 721 742 720 742 0.90 8 16 0.56 76 5.6 0.5 1 10 747 756 747 770 0.87 9 16 0.12 17 7.7 1.2 2 21 774 793 773 796 0.88 10 16 0.0022 0.3 13.1 1.5 3 23 801 821 800 821 0.97 11 16 0.00042 0.057 15.4 1.3 2 23 828 849 827 850 0.93 12 16 6.1 8.3e+02 2.3 0.8 1 23 856 878 856 878 0.77 13 16 0.002 0.27 13.3 2.8 2 23 884 905 884 905 0.97 14 16 1.5e-05 0.0021 20.0 0.7 1 23 909 931 909 931 0.98 15 16 2.8e-06 0.00038 22.3 1.4 1 23 937 959 937 959 0.97 16 16 0.00046 0.063 15.3 1.6 1 23 965 988 965 988 0.97
Sequence Information
- Coding Sequence
- ATGACCAACACGAGCGTCGAGAATAtcgaaaaaccaaaaaactatAGCTGCTTCGTATGCAGCCAACAATTAACGGATAAAGGTCTTCCGTTAATGGTGTCGGAAACCACTTATTCTCAGATATGTTTGGGAAAAAAGCTACAGGAAATCCTGGGAGAGAAGCTTGTGATTCTCCTCAACCAAAAAGACTGTGTTTGTTGGAAGTGCGCtacttacattaataaatttgacaagtTCGAATTCGAGCTTGATCTCATACGAGATTATATTTTGAGCGCTGTTTTGGCCAAGTACAACTGTAACTACGAAGATTTGAAGGAAGTCATCGACGAGACCAAATCTGACGGTGTCATTGGTGAATTATCTCAATTTTCTCTCAATGACGAAgagtcATCCAAggtggaaaaaaatctaaaagtgaGATTCAACTCATCAATAaaagTTAAAACTGAGGACAGTCTTaaggaagtaaaaattaatgatgAAAGAAAAAGTTGGCAACATCAGGAACCGTCTCAGCATGAAACAAATGAAGAATATCAATGTAGCATCTGTTTGCACTCGTTTCCTTCTCAcgacatttttgaaaaacatgTCAAACTTCATAATCTGGCCAAATCTCGGTTTTACAAGTGCAAACTTTGTGACTTCTCGTCGGCTAACCTTGAGATGTACTGCCGACATATCTGCAGTCTCAGTACAAACAAGTACGTATCGTGTACGAGGTGTAAAAGGAGCTTCCTCGCTTCTCAAACCCATAACGAAGAAAACGGGAACGTCGTGTGTAAGCAGTGTTTAGAAAAGAAAGAGATAAGGAATCTCGGGACCGCCCGTAGTCTTCTACTTCCGGGATCCGATGTCACTATTTCTAAAAAGCTTCCGCCTTCGAAACCCGAAGAGCATATAACCAAttctaacaattataaaattcttcagagtaaagaaggaaatatatcCAAACCGCCTCGACCGGCCAAACCGAAGTTCATCAGAAAATTAACTACCGAAGGTTCGATCGAATACGAAGAGCAGCACGATGCACCTTCCGATACTTTATCTACCCCTGACGTTACCATTACAAGTAGACCGGGTGGTTTGAACCCCATGGACGGGGGAACTTACAGCAGTGATGACAACACTACGGATATCACTTTCCATCAACCCGAGCAGGCTGAAAATGTCGTCTACTTGTACGATGATAAGAATCCTGAAATCAAACTCGACAAAACCGTCAAAGTCGAAGCGCAGGAGGATCACGTCAGCGAAATGGTGGTACCCGATCATCTGTTGGAGCAGATATCCAGCAAAACCGGACGTACCACTCCTTACATGCTCAAGTGCAGCAACTGCGAAGAAGTTTTGGACGTTGGTCAGTTACCGACTCACAGATGCTTTTTAGAACTCGAAGCCGTCGAATTTTTCGAAGTCGAAAACGCTCTAGAAATAGACATGGGTTTGACGAAGAAGGAACCCGACAACGACGACTGTCAATACGGTTATATAGATGAGGACGGTTACTATCAAAACGACGAGCAAATAGTCGGTGTGACCGAAAACGAAGAGATCGACGAAAATTATCAACCTCGGCTTCTCTGTAAGACTTGCTTTCAACAGTTCCCCTCCATAACCCAGCTACGGGAGCACTGGCAGGACAGCGGACACGCCTGGGAGGTAGGCACCGTCAATGTCGATGTCAAGACGATTAAAGACAAAGTCAAAGACAACGAACAGACTTTTAAAGTCGTCAAACAAATGTTTTCGATGAAAGCGAATTTACCCACTCAAAATAACGTCGTCGAAAGCGATTACACAGACGAACACATGTTCAATATCAAAAACCTCTTTGTCAAAGTCAGGGCTAATAACGAGTGTGAAACTTGCGGTAAGTTATTTCCAAGCGAAGAAGCGATGAAAGACCACATGATCGAAGACTGTCTGAGTTGTACTTATTGCAATATCAGATTTCTCAGCAATAACCTTTTAAAGAAACATTACATGTGTACCGGCCACTGGAGGAAAATAGTGAGAGATCAAGATCCCAGCACGAGACCACCGCTACATCAGATACCCGCCTGCCACCTGTGTGGGAAAGAGTGCTTCTCCAGGTACAGTCTCTGTGTCCACCTTAAAGCTCACTATAAAGGCACCTCCAAAGGCTTCTGTCTTTACTGCTTAAAAGAATTCGAAGACAAGAGTATGATTTACGAACACGTCATTCAAGCGCACAACGCTCAACTGTTCAAGTGTCAACACTGCGACCGGCCTTTCCTTTCCGAGGCTAAACGAGACAAACACGAAGTGATTAAACACAAGGACGTCGAATGTCGTCTCTGCAATCTGAAATTCAGGTCTCTGAGGACTCTGTTGAAACACAACGACCAGTTTCACCGTGAGAAAGCTTGCAGGGTCTGCGGGAAACACATCGACAGCTGGCAGTCTCTAAAGAGACACGAGAGACGCCATTTCTACGAAAAAGGACTTCAATGCGGCCTTTGCCAGAAAGCGTTCAGAAACAAGACGGCTCTTAAAGTCCACAATGCTTCTCACCACAGAGAAGATTTCAAATACTATTGCAGTATCTGTGACAGCGGATTTATGACTGCCCAAGCCTGCGCGGAGCACAAGACGATCCACCTCAAGTCTAAGAACGTGTGCCCGAAATGCGGCAAGAAATGTCGCTCACGAACGGCATTCTGGATGCACAAGAAGATACACGACGGGCCTTACACTTGCACTGTGTGTAGTAGAGTGTTCAGGGACACTTCACTCCTCGCCGTACACAGGAGGAATCATTTAAGAGCACGTCCGTACCAATGTCCGCACTGTCCTCGTATGTTCTCCGTTCCTAAGACTTTGAAGCGGCATCTCTCTCTCCACACTATCACATACCCTTTCCGCTGCACCATATGTCGTCGCGGCTTCGTCTCCAACAAATCCTACTCTAAACATCTCGCTACCCAACACAATCTCAAGCAAGTAGAAGAAAGGCCGACCCTCCCGTTCAACCCTACCGATGAAGATATCATCCTAGCTGCCGACACCCTGATATCAGATGATACCGTTCTACTTAACGGCTATCAAAGAGAGGAGGAATCTACTATTACCGAAGTTGTTGTTGAAACTACTGAATTGTTTGATGAAATGTTAaactaa
- Protein Sequence
- MTNTSVENIEKPKNYSCFVCSQQLTDKGLPLMVSETTYSQICLGKKLQEILGEKLVILLNQKDCVCWKCATYINKFDKFEFELDLIRDYILSAVLAKYNCNYEDLKEVIDETKSDGVIGELSQFSLNDEESSKVEKNLKVRFNSSIKVKTEDSLKEVKINDERKSWQHQEPSQHETNEEYQCSICLHSFPSHDIFEKHVKLHNLAKSRFYKCKLCDFSSANLEMYCRHICSLSTNKYVSCTRCKRSFLASQTHNEENGNVVCKQCLEKKEIRNLGTARSLLLPGSDVTISKKLPPSKPEEHITNSNNYKILQSKEGNISKPPRPAKPKFIRKLTTEGSIEYEEQHDAPSDTLSTPDVTITSRPGGLNPMDGGTYSSDDNTTDITFHQPEQAENVVYLYDDKNPEIKLDKTVKVEAQEDHVSEMVVPDHLLEQISSKTGRTTPYMLKCSNCEEVLDVGQLPTHRCFLELEAVEFFEVENALEIDMGLTKKEPDNDDCQYGYIDEDGYYQNDEQIVGVTENEEIDENYQPRLLCKTCFQQFPSITQLREHWQDSGHAWEVGTVNVDVKTIKDKVKDNEQTFKVVKQMFSMKANLPTQNNVVESDYTDEHMFNIKNLFVKVRANNECETCGKLFPSEEAMKDHMIEDCLSCTYCNIRFLSNNLLKKHYMCTGHWRKIVRDQDPSTRPPLHQIPACHLCGKECFSRYSLCVHLKAHYKGTSKGFCLYCLKEFEDKSMIYEHVIQAHNAQLFKCQHCDRPFLSEAKRDKHEVIKHKDVECRLCNLKFRSLRTLLKHNDQFHREKACRVCGKHIDSWQSLKRHERRHFYEKGLQCGLCQKAFRNKTALKVHNASHHREDFKYYCSICDSGFMTAQACAEHKTIHLKSKNVCPKCGKKCRSRTAFWMHKKIHDGPYTCTVCSRVFRDTSLLAVHRRNHLRARPYQCPHCPRMFSVPKTLKRHLSLHTITYPFRCTICRRGFVSNKSYSKHLATQHNLKQVEERPTLPFNPTDEDIILAADTLISDDTVLLNGYQREEESTITEVVVETTELFDEMLN*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00744010;
- 90% Identity
- iTF_00744010;
- 80% Identity
- -