Gbue004003.1
Basic Information
- Insect
- Gerris buenoi
- Gene Symbol
- -
- Assembly
- GCA_001010745.2
- Location
- KZ651057.1:507989-528637[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0024 0.33 13.0 2.5 1 21 8 28 8 29 0.94 2 16 0.0026 0.35 12.9 1.2 5 20 141 156 137 158 0.89 3 16 0.028 3.8 9.7 1.0 5 21 188 204 187 205 0.93 4 16 0.0019 0.26 13.3 1.4 1 23 213 238 213 238 0.96 5 16 0.00015 0.021 16.8 0.9 1 21 259 279 259 280 0.95 6 16 0.016 2.2 10.4 7.1 1 23 288 311 288 311 0.93 7 16 0.00036 0.049 15.6 1.4 1 21 316 336 316 337 0.95 8 16 0.18 24 7.2 0.5 1 17 345 361 345 362 0.93 9 16 0.0012 0.17 14.0 0.8 1 21 366 386 366 387 0.95 10 16 0.23 32 6.8 3.4 1 23 395 418 395 418 0.92 11 16 0.021 2.9 10.1 0.1 5 21 424 440 423 441 0.94 12 16 1.3 1.8e+02 4.4 6.5 1 23 449 472 449 472 0.94 13 16 0.023 3.1 10.0 0.3 1 21 499 519 499 520 0.94 14 16 0.0025 0.33 13.0 0.7 1 23 531 554 531 554 0.93 15 16 0.0023 0.32 13.1 0.3 1 21 591 611 591 612 0.94 16 16 0.0026 0.35 13.0 2.6 1 23 621 644 621 644 0.96
Sequence Information
- Coding Sequence
- ATGTTGGCAGATGGAAAACAATTTTTCTGCGACGAATGTGGACGAGGATATGTGCATATGAAACATCTTAATAGGCATAAGAAACAGGAATGTGGCATTGAGCCACAATTCCCATGCTCAGCATCTAGTCAGTCACCTACCTATTTGGCAACTGTTACCAAGTTCCCTTATCTGGTTAAAGAATCCCTATCTAGGAAGAGTGTTACCATTTGTCCCAAGTGTCCTGATCTGGCTAAAGAATCTCTATCTAGAAAGAGTGTTACCATTTGGTCCAATTGTCCTGATTTGGCTAAAGAATCCCTATCCAGAAAGTGTGTTACCATTTGGCCCAAGTGCCCTGATCTGGCTAAAGATTCCCTATCCAGAATGAGTGTTACCATTTGGCCCAAGTGTCTTGGTATGAAGAAACATTTGTGCATCGGATGTGGCAAGAGTTATACTCATTACAAGGATTTGCAGCGTCATCAAACACTTGAGTGTGGTAAAGAGCCGAGATTCTGTTGTCCATATTGTCCGTACAGAGCAAAGAGAAAATTCAGTGGCGGCAAGAAGTACTTCTGCGTATGTGGTCGAGGTTATACTAACTCGACTCATTTGTCGCGTCACAGGAATTTCGAATGCGGCATTGAACCTCAGTTCCCGTGCCCTTACTTCGACTGCCGGTATAGAGCTAAAAGAAAATGGAATCTGAAGAAACATTTGTTATCTAAACATTCGTCGTCTTCCAATGAATCTGGTCATTCCGGTGTTATGATTATGGATGATGGTAAAGCCTTCTTTTGTGGAGAATGTGGTAAAGGCTATGTTAATTCATTCCATTTAAGTCGTCACATCAAATTCGAGTGTGGAGTTGAGCCCAAATTTCCTTGCCAATATTGCCCGTACAAAGGGAAACGAAAACACCACCTTAAAAGTCATATGGTCCACAAACACCGTTGTAAGAAATTTTTTTGCACTCAGTGTGGCAAAGGTTACGTTTACAGTCATGACTTAAGTCGACATCGCAGACTCGAGTGCGGAGTGGAACCGAAGTTCGCTTGTCCTCACTGCACGTATAAGGCGCGTCACAAAGGAAATCTTAAAAcTGACAAGAAACACTACTGTATGGATTGTGGCAAAGGATATGTTTATACTTACGATCTAAGCCGTCACAGAAGATTAGAATGCGGCGTTGAGCCTCAATTCGCATGCCCTCACTGTGCATACAGGGCTAAAAGGAAATGCACACTTAAAATACATCTAGTCAACAAACATTCTCATCTTCTTGCTGAATGTGGCAAAGGTTACGTTTACAGTCATGACTTAAGTCGACATCGCAGACTCGAGTGCGGAGTGGAACCGAAGTTCGCTTGTCCTCACTGCACGTATAAGGCGCGTCACAAAGGAAGTCTAAAGTGTCACATGTTGAACAagcattcaaattttaaaatATTACTTAAGTGCATACCATCTTCCATCAACCTGATTCCCATCCATGCTTCTGTTCAAAAGAAGTATTTCTGTGGGGCATGTGGCAAGGGCTTTACTCTTACACGAAACATGAGTAGACACATCAACTACGAATGTAAAAGTGTCAATGTTGAGCCACAATTTGCCTGCCCTTATTGCCCACATAGAGCTAAACGCAAGGAACATTTAGATGCCCATTTAATCTTGGTTCACGCCACTTTAGCGAAAAGCCTTTACTGTGATGTATCATGTTCACAACACTACAATTGTAAACATCAAATTCTTGACTTAAAAAGAGAAGATCatTCTGTTAAGAAGAAATATTTCTGCGGGGAATGTGGCAAGGGCTATACTCTTCGTCAAAACATGAACAGACACGTCAACTACGAATGTAGAAGTGTCGAGCCACAATTTTTCTGCCCTCATTGTCCACATAGAGCTAGGCGCAAGGAACATTTAGATGCCCACATAATCATGGTGCACACCACTTTAACAAAAAGGTGCATAATGGTCTATCTAGAAATATTGTTTAAGACTTATTAG
- Protein Sequence
- MLADGKQFFCDECGRGYVHMKHLNRHKKQECGIEPQFPCSASSQSPTYLATVTKFPYLVKESLSRKSVTICPKCPDLAKESLSRKSVTIWSNCPDLAKESLSRKCVTIWPKCPDLAKDSLSRMSVTIWPKCLGMKKHLCIGCGKSYTHYKDLQRHQTLECGKEPRFCCPYCPYRAKRKFSGGKKYFCVCGRGYTNSTHLSRHRNFECGIEPQFPCPYFDCRYRAKRKWNLKKHLLSKHSSSSNESGHSGVMIMDDGKAFFCGECGKGYVNSFHLSRHIKFECGVEPKFPCQYCPYKGKRKHHLKSHMVHKHRCKKFFCTQCGKGYVYSHDLSRHRRLECGVEPKFACPHCTYKARHKGNLKTDKKHYCMDCGKGYVYTYDLSRHRRLECGVEPQFACPHCAYRAKRKCTLKIHLVNKHSHLLAECGKGYVYSHDLSRHRRLECGVEPKFACPHCTYKARHKGSLKCHMLNKHSNFKILLKCIPSSINLIPIHASVQKKYFCGACGKGFTLTRNMSRHINYECKSVNVEPQFACPYCPHRAKRKEHLDAHLILVHATLAKSLYCDVSCSQHYNCKHQILDLKREDHSVKKKYFCGECGKGYTLRQNMNRHVNYECRSVEPQFFCPHCPHRARRKEHLDAHIIMVHTTLTKRCIMVYLEILFKTY*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -