Basic Information

Insect: Gerris buenoi
Gene Symbol: -
Assembly: GCA_001010745.2
Location: KZ654370.1:26470-28824[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.025 3.4 9.9 0.1 2 23 45 67 44 67 0.91

2 16 8e-05 0.011 17.7 2.1 1 23 136 159 136 159 0.97

3 16 1.6e-05 0.0022 19.9 1.4 1 23 165 188 165 188 0.96

4 16 0.23 31 6.8 0.4 2 23 192 214 191 214 0.92

5 16 0.06 8.1 8.7 0.3 1 14 219 232 219 242 0.79

6 16 0.029 3.9 9.7 0.9 1 23 245 268 245 268 0.95

7 16 0.18 25 7.1 2.3 1 23 271 294 271 294 0.95

8 16 3.8e-07 5.2e-05 25.0 1.3 1 23 329 352 329 352 0.96

9 16 0.00023 0.032 16.2 3.0 1 23 358 381 358 381 0.97

10 16 0.041 5.5 9.2 4.6 2 23 385 407 384 407 0.96

11 16 0.73 99 5.2 0.4 1 14 448 461 448 471 0.79

12 16 0.029 3.9 9.7 0.9 1 23 474 497 474 497 0.95

13 16 0.69 93 5.3 1.9 1 23 500 523 500 523 0.92

14 16 0.039 5.3 9.2 1.6 1 23 527 550 527 550 0.95

15 16 0.017 2.3 10.4 0.0 1 23 556 579 556 579 0.97

16 16 0.0085 1.1 11.3 1.9 1 23 582 605 582 605 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.025	3.4	9.9	0.1	2	23	45	67	44	67	0.91
2	16	8e-05	0.011	17.7	2.1	1	23	136	159	136	159	0.97
3	16	1.6e-05	0.0022	19.9	1.4	1	23	165	188	165	188	0.96
4	16	0.23	31	6.8	0.4	2	23	192	214	191	214	0.92
5	16	0.06	8.1	8.7	0.3	1	14	219	232	219	242	0.79
6	16	0.029	3.9	9.7	0.9	1	23	245	268	245	268	0.95
7	16	0.18	25	7.1	2.3	1	23	271	294	271	294	0.95
8	16	3.8e-07	5.2e-05	25.0	1.3	1	23	329	352	329	352	0.96
9	16	0.00023	0.032	16.2	3.0	1	23	358	381	358	381	0.97
10	16	0.041	5.5	9.2	4.6	2	23	385	407	384	407	0.96
11	16	0.73	99	5.2	0.4	1	14	448	461	448	471	0.79
12	16	0.029	3.9	9.7	0.9	1	23	474	497	474	497	0.95
13	16	0.69	93	5.3	1.9	1	23	500	523	500	523	0.92
14	16	0.039	5.3	9.2	1.6	1	23	527	550	527	550	0.95
15	16	0.017	2.3	10.4	0.0	1	23	556	579	556	579	0.97
16	16	0.0085	1.1	11.3	1.9	1	23	582	605	582	605	0.98

Sequence Information

Coding Sequence: ATGAAGAGAGAACGAAGGATCGCGGTTTTTTCTCCAGCTATTCCCCGGCGGGCGGAAGAGGAGCGGATGCAATGGTGGGGGTTAAAATGGCGTCCggcaaataaaaagaaatcgaAAAGAAAAAGGATTTTGGAATGTCCTCACTGTCCATACACTGCAGAACTACAGTCCGATCTCCAGGTCCATTTCTACATCGCTCACAAGACATTCAATGCTACGCGGACTCTCAACTGTGAGTCTAGATCTGATCTGATGGTTAATTTGCCTGAGCCTGTGAGCTCCGGATGTAAGAGACTGAAGTCCTTTCAGTGCAATGCTGCGCAGACTTTCAACTGTGAGTCTAGATCTGATCTGATGGTTAATTTGCCGAAGCCAATGAGCTCCGGATGTAAGAGACTGAAGTCCTTTCAGTGCCCCTTCTGTGAGTTCAAGTTGGCTAGAAAAGAGCACCTGAAAAGACACATCAATTCCATTCACATGAAACTGAAACCATTTCAATGCTTGGACTGCGGGATGAAAACCACTAGGAGAGACAACCTCGAGaagcatatttataaaaaacataagaaattaCAGTGCCCTCATTGCGAACATCAAGCTGACGGCCAGGAACTTCTTAAATCGCACATCGACTGGGAACATAACGACTACCTTTATAAATGTCCTCTCTGTGTGAAAGTATTCGAGACAAAAGAAATCCACCGGAATCATATGATCGCCGCTCATAATGAATATCGGTGCTTTCGGTGCGACCATACAACCGACAGTGAGGACAGTCTGATAAGTCATGTCGACTCGGTTCACAACAAATTTGAGTGCCCGTACTGCGAACATCAAAGTGACAGCACGGAATGTCTGAATTCACACCTTGACTCGCTACACAAGAAATCCAATGCTGCAAAGACTCTTAACTCTGAATGCAGATCTGATCTGAGGGTTAACTTGCTGAAGCCCGTGAGCTCCGGAAGTAAGGAAATAAAGTCCTTTCAGTGCCCCTACTGTGAGTTAAAGTTTAGTAGACAAGAGCACCTGAACAGACACATCAATGCCATTCACATAAAACTGAAACCATTTCAATGCTTAGACTGCGGGATGAAAACCAATAGGAAAGAGCACCTCGAGATGCATATgtacaaaaaacataagaaattaCAGTGCCCGCATTGTGACCATCAAACCCACGAGAAGGAAAGTCTGAAATTACATATCAAGTCGGAACACGAGAATGACGGTCATCGAAAGATTAGGCATTTTCCTTTACATCCTTGCCCTCATTGCGAACATCAAGCCAAGTGCCAGCAACTTCTAAAATTACACATCCTCTGGAAACATAAGTACCTTTATAAGTGTTCTATCTGTATTAAAGTTTTCGAGACAAAAGAAATCCACCGGAACCATATGATCGCCGCTCATAATGAATACCGGTGCTTTCGGTGCGACCATACAACTGACAGTGAGGACAGTCTGATAAGTCATGTGGACTCGGTACACAACAAATTCGACTGCCCGTACTGCGAACATCAAAGTGACAGCACGGGATGTCTGAATTCACATCTCGGCTCGCTACACAAGAACCGTTATCAGTGCCCTTATTGTAACTGTCAAAATGACAACAAGGAAAGTCTACAAGCACATGTCGACAAACAGCATTTTaaaggttataattataattgcccCGACTGTATGATAGCATTTCCGACGAGAGAGATTCTGAGAATTCATATGATAACAGTACATGAAGAATTTCAATGCTTTTATTGTGCTTTTAAAACTACGACCAAGGATCGACTGATAAACCACATTAACAGGCTAcataaagcctcgttcacacgatga
Protein Sequence: MKRERRIAVFSPAIPRRAEEERMQWWGLKWRPANKKKSKRKRILECPHCPYTAELQSDLQVHFYIAHKTFNATRTLNCESRSDLMVNLPEPVSSGCKRLKSFQCNAAQTFNCESRSDLMVNLPKPMSSGCKRLKSFQCPFCEFKLARKEHLKRHINSIHMKLKPFQCLDCGMKTTRRDNLEKHIYKKHKKLQCPHCEHQADGQELLKSHIDWEHNDYLYKCPLCVKVFETKEIHRNHMIAAHNEYRCFRCDHTTDSEDSLISHVDSVHNKFECPYCEHQSDSTECLNSHLDSLHKKSNAAKTLNSECRSDLRVNLLKPVSSGSKEIKSFQCPYCELKFSRQEHLNRHINAIHIKLKPFQCLDCGMKTNRKEHLEMHMYKKHKKLQCPHCDHQTHEKESLKLHIKSEHENDGHRKIRHFPLHPCPHCEHQAKCQQLLKLHILWKHKYLYKCSICIKVFETKEIHRNHMIAAHNEYRCFRCDHTTDSEDSLISHVDSVHNKFDCPYCEHQSDSTGCLNSHLGSLHKNRYQCPYCNCQNDNKESLQAHVDKQHFKGYNYNCPDCMIAFPTREILRIHMITVHEEFQCFYCAFKTTTKDRLINHINRLHKASFTR*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -