Gbue034435.1
Basic Information
- Insect
- Gerris buenoi
- Gene Symbol
- Glis3
- Assembly
- GCA_001010745.2
- Location
- KZ652413.1:114732-138060[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00011 0.015 17.3 0.1 3 23 291 314 289 314 0.90 2 15 0.5 68 5.7 0.2 1 23 323 350 323 350 0.86 3 15 4.4e-06 0.0006 21.7 1.0 2 23 357 380 356 380 0.97 4 15 0.00097 0.13 14.3 3.6 2 23 387 410 386 410 0.93 5 15 2.3e-05 0.0031 19.4 0.4 1 23 416 440 416 440 0.95 6 15 0.013 1.8 10.7 0.3 1 23 571 594 571 594 0.97 7 15 0.015 2.1 10.5 1.6 2 23 602 624 602 624 0.96 8 15 0.31 42 6.4 5.5 1 17 630 646 630 654 0.79 9 15 3.6e-05 0.0049 18.8 0.6 1 23 660 683 660 683 0.98 10 15 3.1e-05 0.0042 19.0 2.5 2 23 690 712 689 712 0.95 11 15 2.7e-05 0.0037 19.2 0.9 1 23 718 741 718 741 0.95 12 15 0.013 1.8 10.7 3.5 1 23 749 772 749 772 0.96 13 15 1.1 1.5e+02 4.7 4.0 2 23 779 801 778 801 0.95 14 15 0.094 13 8.0 0.7 1 23 807 830 807 830 0.90 15 15 0.014 1.9 10.6 6.1 1 23 836 859 836 859 0.96
Sequence Information
- Coding Sequence
- ATGGATCTCGATATGGAAGAATTTAACGAGATCGAATGGACAGACGACGATGTTTCATCTTGGTTCGCGCCTCCAAGTACTAATCATCTTAAAGATAACGGATACGGCAAGAGGAAAGACGAATGCGCTTCTGAACAAATGTTCGGCGAGATTTCAATGTTTGGAGACGAGCAGTGGACACCGGATGATGATGTTTTAGTTCTGGTAGATCACGACTATGAAAACGAAGAGCGTCTTGTCAGAGCTTTAGACAAACATTGTTCGAGTTTCGAGGAGAATACTTTTGAAGACAGGTATGTAAATCGACAAATTCCCGACACAAAATTACCTCCTGCTTACAATCATCAAGCGAATTCTTACTTTGCTGAAGATGATAACTCCGTCTTTTCACAAGATTTCTATGTTTTCGAAAACAGTGAGAACCATTCATCATCTAATTCATCAATTCAGTCTCACTTTCATCAAGAATTCCCTTCGAGCAATACATACAATCAAGTACCGGCTAATCATCATCAAATAAGCAATCCTTCTTTAATCCCTTTAAACTTCACAAGCTTGGAACCCCACCTCCAAAACCAAAGCAGTCTGCCTCACCACCAGGTACCTTCTGCATTTCCTGACCATTCATACTCTGGAGAACCCCGAGGTCACCTAAGTTCAGTCAGTTCTGATGAAGGATTTTCAGAGCCGCTTCCACCAATTTGTTCCTTCCTTCCGTCAGCAGTTCAGACTCCATCTGCAAAACagGTCGAGGTTAAAGAAGAAGAGCCGGACATTTTAGAACTGGGTGAAGAAGATTCTGACTTAGGAGAAAGCAATGACGAGGAGCAAGAAGATACCTGGAAGAAAGCACAGGaCGAGCTGCTAGAATGTCGTTGGGAAGGTTGCTGGAAAATTTTCTCAACTCAAAGTCAGCTGGTTCGTCACATTGAATCATCTCATTTGGATTCTCCGAGGCCTGAACTCTATCCCTGTTTCTGGCTCGACTGTCCGAGGAGATTAAGACCGTTTAATGCTCGCTACAAACTCCTCATCCATATGAGAGTTCATTCTGGCGAAAAGCCTAACAAGTGCCCGTTTACAGGTTGCAAGAAGGCATTTTCTCGGTTAGAGAATCTTAAAATTCACCAGAGATCCCACACAGGAGAGCGGCCTTACCTTTGTCAATTCACACATTGTCGCAAAGCATTCAGCAATAGTTCAGATAGAGCAAAACATCTAAGGACACATTTCGATACAAAACCATATGCATGTCAAGTAGAAGgctgttcaaaaaaatatacagatcCAAGTTCATTAAGAAAACACATTAAGAATCATGGTGGACATCATTACAGCAAACCTAAAAAACTGACTGCAAGTAAACCTGTTGTCTCAGCGGCAGAGGTCCAAGCTAGACGAATGAAGCCAATTAAAAATGAAGTATCAACAGAAGAATACAACATCAAAACTGAAGCTAAAGAAGACCAATGGATAGACTCAGAAGGAAAAcagagtaataaattattaaattatgaagaTCTTAATGAGGATATCATCAATGAGTTGAATAAtgGTTTCGGATGCTTTGATGACGTGGATGAACAAATTTCTGATACAGAAGACTCTTACAACCCCTACTCAGAAGGGTCTGTCAAGTCAGAACCATTTAGTGAGGAGCTTCTCAATACCGAGTCATCTGCAGCTGAGGAAGCCAACTCTGATAATCTATATCCTTGCCTTCGGTGCAACTTCATATCAAGAAGCGCTTGGAATTTAAACACACACATATTAAAGTCGCATGGAGTCAATTCGAGTCAGCCACAATGTTCTGAATGTAACTTTACGTCCAAGTCGAAAAAAGCAATgaaaatacacataaaattaTCTCATGGGGTGACCGGCCCTTTTCAATGTCCCCATTGTAAATATAGTACAAAAAGAAGTAAGAACTATTTCGACAGACATCTAAAGAAATTCCATTCGGGCgaatatgaatttaaatgtgAAGAATGCGGTTACAGTTCTCCTTTTAAAACCCTTCTTACGAGGCACATTAAATCTGTTCATGTCAACAAAGAAGTTTTGAACTGCTCGGAATGTAATTACACCTGTAATCGCAAGGATAACTTACTTCGTCACATTCGAAATGTTCACAAAAAAGAGAAACGTTTTGCTTGTTCAGAATGTGATAAAAAATTTGGGGAAAGTTCCCATCTGAGAACTCATATAGATAGCATTCACAGATCGTACACTTCGAAAATTCATTCGTGCACCGTCTGTGATTATACGACTTCTGTGAGAAACTGTCTGACCCAGCACTTAAGAGAAGTTCACGGGGGTAGAAAACCACAGAAGTGTCCTCATTGTACGATGATCTTAATGTCTAAAAATGCTTTGTTTAATCACTTCCGAGAGTGCCATACTGTGGAAAGGCCTTATTTATGTTCGATGTGTCGATACACGAGTGTCACTAAAACAGCTCTTCAAAGTCATTTTCAGGATGTGCATTCGATGGACAAACCGTTTTGCTGTTGTCACTGTGGTTACAGTACAGCAAGAAGGGCTCGGTTAAAAGAACATATGATGTCGGTGCACAGAGTAGAACCAGGAACTTGA
- Protein Sequence
- MDLDMEEFNEIEWTDDDVSSWFAPPSTNHLKDNGYGKRKDECASEQMFGEISMFGDEQWTPDDDVLVLVDHDYENEERLVRALDKHCSSFEENTFEDRYVNRQIPDTKLPPAYNHQANSYFAEDDNSVFSQDFYVFENSENHSSSNSSIQSHFHQEFPSSNTYNQVPANHHQISNPSLIPLNFTSLEPHLQNQSSLPHHQVPSAFPDHSYSGEPRGHLSSVSSDEGFSEPLPPICSFLPSAVQTPSAKQVEVKEEEPDILELGEEDSDLGESNDEEQEDTWKKAQDELLECRWEGCWKIFSTQSQLVRHIESSHLDSPRPELYPCFWLDCPRRLRPFNARYKLLIHMRVHSGEKPNKCPFTGCKKAFSRLENLKIHQRSHTGERPYLCQFTHCRKAFSNSSDRAKHLRTHFDTKPYACQVEGCSKKYTDPSSLRKHIKNHGGHHYSKPKKLTASKPVVSAAEVQARRMKPIKNEVSTEEYNIKTEAKEDQWIDSEGKQSNKLLNYEDLNEDIINELNNGFGCFDDVDEQISDTEDSYNPYSEGSVKSEPFSEELLNTESSAAEEANSDNLYPCLRCNFISRSAWNLNTHILKSHGVNSSQPQCSECNFTSKSKKAMKIHIKLSHGVTGPFQCPHCKYSTKRSKNYFDRHLKKFHSGEYEFKCEECGYSSPFKTLLTRHIKSVHVNKEVLNCSECNYTCNRKDNLLRHIRNVHKKEKRFACSECDKKFGESSHLRTHIDSIHRSYTSKIHSCTVCDYTTSVRNCLTQHLREVHGGRKPQKCPHCTMILMSKNALFNHFRECHTVERPYLCSMCRYTSVTKTALQSHFQDVHSMDKPFCCCHCGYSTARRARLKEHMMSVHRVEPGT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -