Basic Information

Insect: Gerris buenoi
Gene Symbol: PGBD4
Assembly: GCA_001010745.2
Location: KZ651367.1:74865-112062[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.022 2.9 10.0 1.3 1 23 1234 1257 1234 1257 0.96

2 19 0.01 1.4 11.1 2.4 1 23 1263 1286 1263 1286 0.96

3 19 1.7e-05 0.0023 19.8 3.1 1 23 1292 1315 1292 1315 0.97

4 19 0.029 4 9.6 2.0 1 23 1321 1344 1321 1344 0.96

5 19 0.0058 0.79 11.8 1.6 1 23 1350 1373 1350 1373 0.96

6 19 5.7e-05 0.0077 18.2 3.5 1 23 1379 1402 1379 1402 0.97

7 19 0.0037 0.5 12.5 3.3 1 23 1408 1431 1408 1431 0.98

8 19 0.00046 0.063 15.3 2.0 1 23 1437 1460 1437 1460 0.96

9 19 0.022 2.9 10.0 1.3 1 23 1615 1638 1615 1638 0.96

10 19 0.01 1.4 11.1 2.4 1 23 1644 1667 1644 1667 0.96

11 19 1.7e-05 0.0023 19.8 3.1 1 23 1673 1696 1673 1696 0.97

12 19 0.029 4 9.6 2.0 1 23 1702 1725 1702 1725 0.96

13 19 0.0058 0.79 11.8 1.6 1 23 1731 1754 1731 1754 0.96

14 19 5.7e-05 0.0077 18.2 3.5 1 23 1760 1783 1760 1783 0.97

15 19 0.0037 0.5 12.5 3.3 1 23 1789 1812 1789 1812 0.98

16 19 0.00046 0.063 15.3 2.0 1 23 1818 1841 1818 1841 0.96

17 19 0.004 0.54 12.4 2.2 1 23 1847 1870 1847 1870 0.93

18 19 0.0031 0.42 12.7 2.8 1 23 1876 1899 1876 1899 0.96

19 19 0.054 7.3 8.8 6.8 1 23 1905 1928 1905 1928 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.022	2.9	10.0	1.3	1	23	1234	1257	1234	1257	0.96
2	19	0.01	1.4	11.1	2.4	1	23	1263	1286	1263	1286	0.96
3	19	1.7e-05	0.0023	19.8	3.1	1	23	1292	1315	1292	1315	0.97
4	19	0.029	4	9.6	2.0	1	23	1321	1344	1321	1344	0.96
5	19	0.0058	0.79	11.8	1.6	1	23	1350	1373	1350	1373	0.96
6	19	5.7e-05	0.0077	18.2	3.5	1	23	1379	1402	1379	1402	0.97
7	19	0.0037	0.5	12.5	3.3	1	23	1408	1431	1408	1431	0.98
8	19	0.00046	0.063	15.3	2.0	1	23	1437	1460	1437	1460	0.96
9	19	0.022	2.9	10.0	1.3	1	23	1615	1638	1615	1638	0.96
10	19	0.01	1.4	11.1	2.4	1	23	1644	1667	1644	1667	0.96
11	19	1.7e-05	0.0023	19.8	3.1	1	23	1673	1696	1673	1696	0.97
12	19	0.029	4	9.6	2.0	1	23	1702	1725	1702	1725	0.96
13	19	0.0058	0.79	11.8	1.6	1	23	1731	1754	1731	1754	0.96
14	19	5.7e-05	0.0077	18.2	3.5	1	23	1760	1783	1760	1783	0.97
15	19	0.0037	0.5	12.5	3.3	1	23	1789	1812	1789	1812	0.98
16	19	0.00046	0.063	15.3	2.0	1	23	1818	1841	1818	1841	0.96
17	19	0.004	0.54	12.4	2.2	1	23	1847	1870	1847	1870	0.93
18	19	0.0031	0.42	12.7	2.8	1	23	1876	1899	1876	1899	0.96
19	19	0.054	7.3	8.8	6.8	1	23	1905	1928	1905	1928	0.95

Sequence Information

Coding Sequence: ATGTTGTTCTTGTATAATATTGTAGGTTTACCCCAGGAAAGGTTTGTAAAAGCTGAGCCTGCTTCACCTGTCAGGGATACCACAGATGTAAACACAATACCAGTTGAGGAGATAAAATGTGAGCCGAGTCTGGAAATGTTCTTTAATACAGAAGATTCACCTGCCGGACATTCCAGACAAGTAGAGGAGAGATCAATCAGTCCTCCAGTTGAGGAGATAAGATGTGAGCCGAGTCTGGAAATGTTCTTTAATACAGAAGATTCACCTGCCGGACATTCCAGACAAGTAAAGAAGAGATCAATCAGTCCTCCAGAGGTCAAAGTTATACTCTACGACGATAAAGAGTTCAAGGAACATTTTCGGATGAGCAGAGAAACCGTCGCAAATATCGATCGAATGTTCACTGAGAGCGATTATTTTAAAGCTGGCTCTGGACAATTCGGCAGTATATCTTCTTTAAACCAGgttcttATATTTTTGTGGTTTGCCGGGCATCAAACGGCAAGTTTTCGTGATGTCGCCGACAGGTTCAAAATCACAATCAGTTCGTTACATCGTATTATAAGGAGGCTCAGCGTGTTCCTGAGTAATCTATCTCCGCAGACAATATTGTGGCCTACGGTCGAGGAAAGACAAGCGTCCGAAAACCACTTTGCAAGCAAAGGTTTCCCCGGTATGATCGGTGCCATAGGTTGCGCACATATCAAGATCGATAAGCCTGAAAACGATCCCGATTCGTACGTCAATCGAAAGGGATATTTTTCCGTGCAGATTCAAGCCGTGTGTGACGAGAGGAGACGATTTATAGACGTCTTCATCGGATATCCCGGTTCCGTCCCAGGCAGCACTATATTACGGAATTCACCTCTCTTCTCGTCGCTGCCAGACAGATGCGGACCGTTTTGTATTTTAGGAGACGGCGGGTATCCGTTATTGAACAATCTGCTAACTCCCTACAAGGATAGAGGCCAGTTGaccaatattgaaataaattacaatgcTAAACTGAGCCAGAATAGGTACATAATAGAGCATACTTTCGGCATGCTCAAACAAAAATTCAGACAGCTTTACCACGTTAAATTGAGGAGCATACCTTACATCGTTCATTTCATCAGGGCGTGCTGCGTGCTGCACAATATGAGCATCGATGAAGACTTTGAAGCGGAACAAGTCAGCAGCGAAGTGGACAACTCACCGAATCAACTGTCGGAGGGCTCGGTAGATAGGTGCAAAGCTATCAGAGACCGCATTGCTCGAACATtGTACTTATCTTCAACTGTTGATTCATCCGTACTTATAGGTTTGATAAGTTCAGGTTTGTTTGATAGAGACACAGAAACATCTGATTTAGATGTCCTGCCTGAGTACTTACCTCCGGGACCGTCTAATCTATCAGTTATGCATTCTGTTCATAATGGTCTTGACATTGGCGCTGGACCAACACAAGTATCTAATGTGTTTCGAAGCAAAACCGGCTTCAAATTTACCGAACTATCGGAGAAACAAGGAAATACTTCGGTATTTAATGACTTGTCGGACTATGAAGACTCGTCATCCGAGGATGATGACTTACTTAATCCGGATTTCAAATCTGACGTGGACGATGAAGAGACGCTCTCTGATGAATTTGACTCCGACGACACTGATGAAAAGTATTCAGAAGTACTGCTGATCGAGCGGGTCGTGCCAGAAGAGAGTCAACCTGGAGCTAGTGGACTTAATAGTGAGAGCACTGGTCAGGTTGTGAACCCTCAGGCTGTTTGTGTAATGGTACCCTCTTATCCTATACCGGTCAAGCCCTCATCGACAACTTCAGAACCGATTAAGGCACCTCGAATTCCTTATATCGGTCCCCCTGGACTCAAGGTGACAATGGAAAGTCAAGACCCCTGGGactttttcaaaatgttatttaccgaccgatttttaaataaaattatagaagaaACGAATATAAACGCCGAGCTTATTTTTTTGGAGAGTGAAAAAGTGAAATCTCGAATCGCAAGTTGGAAACCTATGACAAAAGGGGACTTGTACGTTTTTCTCGGTCTTCTCTTTCATATGGGCAATATCGGTGTCGTTAAAATTCGGGATTACTGGCGAACCGATCGACtctataaaattccatttttcaggGAGAATATGGGTCGCGACCGCTTTGAACTTTTGCTAAGAGCGTTATATTTCAACCGGAGACGAACCTCCGAGGGACAAGATCGTGTCTACAAGCTTCGGCCGGTTTTAGACCACTTCAATGATATAATGGACAGAGTCTATCGCCCGAGAAGAGAATTAAGCATCGACGAGTCGATGGTATTGTGGAGAGGCCGGCTTATATCCCGTCAGTACGTCAAATCTAAACGACATAAATACGGCGTCAAGCTATTCATCATGGTGGAAGACACCGGTCTGGTGCATCGGGTTATCGCACGTCCCGGTGAAGCCGACACTGGTACCTCTCATGCACATTGTGTTGTGGAAACTTTATTGAATAAGTTCGGAGGTCAGGGCCGTTCCCTGCTCACGGGTAATCTTTTTTCAAGTGTTCCCGTTGTATCGCACCtgctaaataacaaaatatattgctCCGGAACTCTTAGGCCGAACAGGGTGAGTGATCCGAAAGACACGGAAGACGTCAAGCTGAAGCAAGGGGAAGTCGTCCGGCGATCGAGTGAGGAAGGTATTTGTGTCTTGAAATGGAAAGACAAGAGGGACGTATGCGCCGCCTCATCAGAACATTGTGTAAATACCATTGAAATTCAGAATAGCAGAGAGCACAAAGTTACAAAGACTCAAGAGGTAGCCGAATACAATAAACATCATATTGATCGCTTGGATCGACTTTTAGGTTTTAACCTCACCTCGAGAAAAACCATTAGGTGGTATAAGAGCATTGCCCTACATCTAAcgcaaattttgttaaataatgcGTTtctcctttataaaaaaaatgtaccggGTAAGAAATCATCTTTTAAACTATTTCGAGAGGAAATAGTTACGAACCTGGTGGACAAGGGACACCTACTTAACGGTACTGTTAGCCTTCCTGTCGTCCCTTCACAAAGGTCCGTAGCTCGTCACTATATTGACTACCTGGCTTTCAAAGAAGGAACCAATAGGAGGAAGCAAAAAGATTGTCGGCAATGTACTAAGAAAGGGATGCGTAAATCGGTCAACACTTTTTGTCCGGACTGCCCAGACAATCCCGGTTTGTGTATTGGGCTTTGTTACAGAGATTACCATGAACAGTTATTCAAGAACTTCCTGATTGATGTTCTGACCACACAACGTGAGATACCCACAATGGGCTCTGGTGCCACGGGCATTGTGCTGGAACCCTGTCTTGCTAGAAGATCCGCGCGTTCATTTCCCTCAATGCCTTTGTGTCCTGGTACCCAAAGCAGTTTTACCTCATTCGTTCTAGAAAGAGATTCCAAAGTTTGCTTACATTCTGAAACTAGCTTGGATGTGCATTTGGGTGCGGCTAATAATGAGGAAACGGGAAGTGGGAGGAGTTCTCTTTACTCAGCAGCGTACAATGCTCAAGTAGTACAACCTGCTCAATACAACAGTGATGACTTTATACCTGGGGAGTCCAACGCTACTCAGAATCCACACTGTCAGCTCCAAACTTACACCAAACCTCATCAGAAAAAACACATTGCTGACAACAATGTTGACAAGACATTTCAATGCCAACACTGTGACTATAAGACCAACTGGAAGGGGAATTTGAAAATCCACATCGACTCCGTACATATGAAAATGAGGGCGTTCCAGTGCCCTCATTGTGACCATAAAACCAACCGGAAGAATAGTATGGTAATTCATATTGATTCcgtacataagaaaataaaggcttTTCAGTGCCCTCATTGTGACCATAGGACCAATAGGCAGAGCAATTTGAAAGTCCACATCGACACcgtacataagaaaataagggaatttcagtgccctcattgCAACCATAAAACTAATTGGGAGAGTAATTTGAAAGTTCACATCGACTccgtacataaaaaaataaagacgtTCGAGTGCCCTCATTGTGACCATAAAGCCAACAGAAAAAATACTCTGATGATCCATATCGATTCGGTACATAACAAATTAAAGCCTTTTCAGTGCCCTCATTGCGACCATAAAACCAATAGGCAGAGCAGTTTGAAAATCCACATTAACTCGGTacacgaaaaattaaaaacgtttcAGTGCCCTCATTGCGACCATAGAACCAACAGGAAGAACAGTATGGTAATTCATATCAAGTCGGTACACATGCAAATAAAGTCTTTCGAGTGCCCGCATTGCGACCATAAAACCAACAGGGAGAGTAGTTTGAAAATCCACATCGACTCGGTGCATAAGAACGTGTGGGCATATATGGTTTGTGTTGTTACTCCAGTTGAGCAGATAAAATGTGAGCCGAGTCTGGAAATGTTCTTTAATACAGAAGATTCACCTGCCGGGCATTCCCAACAAGTAGAGGAGAAATCTATTAGTCCTCCAGTTGAGCAGATAAAATGTGAGCCGAGTCTGGAAATGTTCTTTAAAGCAGAAGATACTTCACCTGCCGGGTATTCCCAACAAGAAGAGGAGAGATCGATCAGTCCACCAGGTGCGGCTAATAATGAGGAAACGGGAAGTGGGAGGAGTTCTCTTTACTCAGCAGCGTACAATGCTCAAGTAGTACAACCTGCTCAATACAACAGTGATGACTTTATACCTGGGGAGTCCAACGCTACTCAGAATCCACACTGTCAGCTCCAAACTTACACCAAACCTCATCAGAAAAAACACATTGCTGACAACAATGTTGACAAGACATTTCAATGCCAACACTGTGACTATAAGACCAACTGGAAGGGGAATTTGAAAATCCACATCGACTCCGTACATATGAAAATGAGGGCGTTCCAGTGCCCTCATTGTGACCATAAAACCAACCGGAAGAATAGTATGGTAATTCATATTGATTCcgtacataagaaaataaaggcttTTCAGTGCCCTCATTGTGACCATAGGACCAATAGGCAGAGCAATTTGAAAGTCCACATCGACACcgtacataagaaaataagggaatttcagtgccctcattgCAACCATAAAACTAATTGGGAGAGTAATTTGAAAGTTCACATCGACTccgtacataaaaaaataaagacgtTCGAGTGCCCTCATTGTGACCATAAAGCCAACAGAAAAAATACTCTGATGATCCATATCGATTCGGTACATAACAAATTAAAGCCTTTTCAGTGCCCTCATTGCGACCATAAAACCAATAGGCAGAGCAGTTTGAAAATCCACATTAACTCGGTacacgaaaaattaaaaacgtttcAGTGCCCTCATTGCGACCATAGAACCAACAGGAAGAACAGTATGGTAATTCATATCAAGTCGGTACACATGCAAATAAAGTCTTTCGAGTGCCCGCATTGTGACCATAAAACCAACAGGGAGAGTAGTTTGAAAATCCACATCGACTCGGTGCATAATAAAGTATACGCGTTTCAGTGCCCTCATTGCGACCATAAAACCAACATGAAGTACAGCCTGAAAATTCACATCGATGCAGTACACAAGAAAATCATGGCTTTTCAGTGCCCTCATTGCGACCATAAAACCAACAGGGAGAGTCGTTTGAAAATTCATATCGACTCGGTGCATAAGAACGTGTGGGCATTTCATTGCCCCCATTGTGACCATAAAACCAACAGAAAGTACAGACTGAAAAATCATATCGATTCAGTacataagaaaattaaagattttccAGTACCCTCGTTGTTACCGTTAAATCAATAG
Protein Sequence: MLFLYNIVGLPQERFVKAEPASPVRDTTDVNTIPVEEIKCEPSLEMFFNTEDSPAGHSRQVEERSISPPVEEIRCEPSLEMFFNTEDSPAGHSRQVKKRSISPPEVKVILYDDKEFKEHFRMSRETVANIDRMFTESDYFKAGSGQFGSISSLNQVLIFLWFAGHQTASFRDVADRFKITISSLHRIIRRLSVFLSNLSPQTILWPTVEERQASENHFASKGFPGMIGAIGCAHIKIDKPENDPDSYVNRKGYFSVQIQAVCDERRRFIDVFIGYPGSVPGSTILRNSPLFSSLPDRCGPFCILGDGGYPLLNNLLTPYKDRGQLTNIEINYNAKLSQNRYIIEHTFGMLKQKFRQLYHVKLRSIPYIVHFIRACCVLHNMSIDEDFEAEQVSSEVDNSPNQLSEGSVDRCKAIRDRIARTLYLSSTVDSSVLIGLISSGLFDRDTETSDLDVLPEYLPPGPSNLSVMHSVHNGLDIGAGPTQVSNVFRSKTGFKFTELSEKQGNTSVFNDLSDYEDSSSEDDDLLNPDFKSDVDDEETLSDEFDSDDTDEKYSEVLLIERVVPEESQPGASGLNSESTGQVVNPQAVCVMVPSYPIPVKPSSTTSEPIKAPRIPYIGPPGLKVTMESQDPWDFFKMLFTDRFLNKIIEETNINAELIFLESEKVKSRIASWKPMTKGDLYVFLGLLFHMGNIGVVKIRDYWRTDRLYKIPFFRENMGRDRFELLLRALYFNRRRTSEGQDRVYKLRPVLDHFNDIMDRVYRPRRELSIDESMVLWRGRLISRQYVKSKRHKYGVKLFIMVEDTGLVHRVIARPGEADTGTSHAHCVVETLLNKFGGQGRSLLTGNLFSSVPVVSHLLNNKIYCSGTLRPNRVSDPKDTEDVKLKQGEVVRRSSEEGICVLKWKDKRDVCAASSEHCVNTIEIQNSREHKVTKTQEVAEYNKHHIDRLDRLLGFNLTSRKTIRWYKSIALHLTQILLNNAFLLYKKNVPGKKSSFKLFREEIVTNLVDKGHLLNGTVSLPVVPSQRSVARHYIDYLAFKEGTNRRKQKDCRQCTKKGMRKSVNTFCPDCPDNPGLCIGLCYRDYHEQLFKNFLIDVLTTQREIPTMGSGATGIVLEPCLARRSARSFPSMPLCPGTQSSFTSFVLERDSKVCLHSETSLDVHLGAANNEETGSGRSSLYSAAYNAQVVQPAQYNSDDFIPGESNATQNPHCQLQTYTKPHQKKHIADNNVDKTFQCQHCDYKTNWKGNLKIHIDSVHMKMRAFQCPHCDHKTNRKNSMVIHIDSVHKKIKAFQCPHCDHRTNRQSNLKVHIDTVHKKIREFQCPHCNHKTNWESNLKVHIDSVHKKIKTFECPHCDHKANRKNTLMIHIDSVHNKLKPFQCPHCDHKTNRQSSLKIHINSVHEKLKTFQCPHCDHRTNRKNSMVIHIKSVHMQIKSFECPHCDHKTNRESSLKIHIDSVHKNVWAYMVCVVTPVEQIKCEPSLEMFFNTEDSPAGHSQQVEEKSISPPVEQIKCEPSLEMFFKAEDTSPAGYSQQEEERSISPPGAANNEETGSGRSSLYSAAYNAQVVQPAQYNSDDFIPGESNATQNPHCQLQTYTKPHQKKHIADNNVDKTFQCQHCDYKTNWKGNLKIHIDSVHMKMRAFQCPHCDHKTNRKNSMVIHIDSVHKKIKAFQCPHCDHRTNRQSNLKVHIDTVHKKIREFQCPHCNHKTNWESNLKVHIDSVHKKIKTFECPHCDHKANRKNTLMIHIDSVHNKLKPFQCPHCDHKTNRQSSLKIHINSVHEKLKTFQCPHCDHRTNRKNSMVIHIKSVHMQIKSFECPHCDHKTNRESSLKIHIDSVHNKVYAFQCPHCDHKTNMKYSLKIHIDAVHKKIMAFQCPHCDHKTNRESRLKIHIDSVHKNVWAFHCPHCDHKTNRKYRLKNHIDSVHKKIKDFPVPSLLPLNQ*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -