Basic Information

Insect: Gerris buenoi
Gene Symbol: -
Assembly: GCA_001010745.2
Location: KZ651321.1:196117-199667[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.039 5.4 9.2 0.0 1 23 322 345 322 345 0.94

2 14 0.00038 0.051 15.6 0.9 2 23 365 387 364 387 0.94

3 14 0.0025 0.33 13.0 0.2 2 23 393 415 392 415 0.91

4 14 6.7e-07 9.1e-05 24.2 0.8 2 23 418 439 417 439 0.97

5 14 1.5e-05 0.0021 20.0 1.7 1 23 445 467 445 467 0.96

6 14 4.4e-05 0.006 18.5 1.2 3 23 475 496 474 496 0.94

7 14 0.02 2.7 10.2 2.4 5 23 509 527 507 527 0.97

8 14 7.8e-05 0.011 17.7 1.1 2 23 533 555 532 555 0.97

9 14 2.8 3.8e+02 3.4 1.3 2 23 572 592 571 592 0.90

10 14 0.01 1.4 11.1 4.0 1 20 598 617 598 620 0.92

11 14 0.00024 0.033 16.2 0.6 1 23 628 650 628 650 0.99

12 14 2.7e-05 0.0036 19.2 2.9 1 23 656 678 656 678 0.98

13 14 8.5e-07 0.00012 23.9 0.8 1 23 684 706 684 706 0.96

14 14 0.0057 0.78 11.9 9.7 1 23 712 734 712 735 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.039	5.4	9.2	0.0	1	23	322	345	322	345	0.94
2	14	0.00038	0.051	15.6	0.9	2	23	365	387	364	387	0.94
3	14	0.0025	0.33	13.0	0.2	2	23	393	415	392	415	0.91
4	14	6.7e-07	9.1e-05	24.2	0.8	2	23	418	439	417	439	0.97
5	14	1.5e-05	0.0021	20.0	1.7	1	23	445	467	445	467	0.96
6	14	4.4e-05	0.006	18.5	1.2	3	23	475	496	474	496	0.94
7	14	0.02	2.7	10.2	2.4	5	23	509	527	507	527	0.97
8	14	7.8e-05	0.011	17.7	1.1	2	23	533	555	532	555	0.97
9	14	2.8	3.8e+02	3.4	1.3	2	23	572	592	571	592	0.90
10	14	0.01	1.4	11.1	4.0	1	20	598	617	598	620	0.92
11	14	0.00024	0.033	16.2	0.6	1	23	628	650	628	650	0.99
12	14	2.7e-05	0.0036	19.2	2.9	1	23	656	678	656	678	0.98
13	14	8.5e-07	0.00012	23.9	0.8	1	23	684	706	684	706	0.96
14	14	0.0057	0.78	11.9	9.7	1	23	712	734	712	735	0.96

Sequence Information

Coding Sequence: atGGAAATTCAGGGTATGGTTGCGTGCCCTGTGTGCACCCTATACCTGAGGGAAGGGATGTCCATGCACAGCCACTTGGACACACATCCGAAGGATCAGGTCATTGAAGCTTTAGTACGAATGTATTCTTCTGAGAGAAGTATGCCCTATCCTCACTCTCCAGCTTCCTCTATAGTAGGATCATTCCTTCCTGTAGTATCTGAAGAGCATGTCGCCAGCTACAAACTGCAGCAAGTAACAAGTGTGATTCACCAGCCCATACTTCCTTACCCAGTATACAGCCATCAGCCACCCTACATACCGGCCGGCCACTATGTTCCTGAACCTCCACAGGAGTGTGCCAAAAGCAATTTGTTGCCTTTGGAAAGTACAGACATGACCTCGAACTCGGTGATAAACTTGTCTCAAGTCCAAGACTATTCGACCAACGTGGACAATGGGATGATATCACATCATCACCATAGCTCTGTGGGTGAGGCCATCGTGAGACATATGGAACATCTAGATTCACATCACGACGATTCAGTCGAAGTGTTCAAACCTGAAGTTCTGTTTGTCACACCTAATGTGGAAGACGAAGAAGTTGCAGAATCCCCCCCTACTAGCCCACGATCGGCAATATCGGTGAGAACAGATCTCACAGACCAAAGAAATCATCATGAGAGTGAAATGTATGAAGAATATATTCTGTCAGATTGTAATTATCAAGATGAGGCCGCTCGACATGCTGATCAGGAATCATCAAAAAATCAagATTTGGATGGGCATATGGACCTTAGAGTGGAAACAAGAGACCAGTCACTTGCAACTGAGGAGAGAATGCCGCCACAGGGAGAGATTACGGATCCCTCACCTCGACCTGAGTGGGTCCATCATGTCAGCaatgaagAACCCATGTTGTCAAATGAGAATGTGTGGGACCTGAGAAGTGACCACAGTGAAAAGAAGCACGATGAGAACAAATATCCTTGTCTTTATTGTGATGAAAGCCTGGAAACACCTACAGATAGGAGAGTGCATATAGCCAATGTACATAGTTCCACACCCCAAGTCAAGACTGATAAGGATAAGAAAGAAGTCAAACTTAGTAAAGTATGTACTAAGTGCGATCGTACCTTTCCCTCGCTTAAATCGCTCCGAGAACACAATAAAATCGAGCATCCTCGTGCCCTTAAATCATGTGATATTTGCCAAgaagtttttgtaaataaaaaaacttacattCAACATCTAGTCAACATTCATCCCCTTGAGTGTAAGGTTTGCGGCAAGACTTTCACCAAACCTAATAGCTTGACACTTCATCTCAAAACCCATATGAATGTCAAGCCTCATGTTTGCCACCTTTGTCCGAAATCTTTTGTGACTCCTCAGAAACTGAAGGAGCACATCAACGGCCATACTGGTGCCGCTCCGATTTTATGCGACATGTGCCCTAGAACATTTAAACGTTATTCTAATTTGAAGCAGCACAAAGATATTACACATTTCAAagtcaaaaagaagaaaaaagatttCTTCTGCCACTGCGGAGAATCTTTTCAGTCGAAGAAAAAATTGGCTCGACACGAAGAAACCCACAATGTAAAACCCAAGCAGTGCCCTTTCTGTAACGAAAAATTTGTATACGTTACCAGTCTTACACGTCACATAAGAAGATCCCACGACGCCCACTATCTCCCTAAACTAGCTAGTAACAAAGCAAAAAATGTGCAGTGTCCTGTGTGTAATCTTACTATGCTCGAAACTTCCCTGACTTCACACATGAAGTACCATTCcgaacataaaaaattttcttgTGCAATATGCGGTAAGAAATTCCACAAAAAGTGGAATCTTCATTTACACAAATGGACCCACGCTTCCAGAATATCTAAACCTTACAAGTGTAACCTTTGCAAAGGAGCGTTTATTCGTTTTGGAGATTTCCAGGCTCATCTAAGATCTCATTTAGGACATAAACCGTTTACGTGCAATCACTGCGGTATGCAGTTCATCAGGAAGCAGAACTGGCAAAGGCACGAAAGAGAACACAGCGGTGTCAAAACACATGCCTGTCCCGAATGTGGCAAGACTTTCTTTAGGAGTTACTACCTCGCAGAGCACTTACGTGTACATAACGGCCAGAAGCCTTTCACTTGTCATATCTGTAATAAAATGTCTACTACTAAATCCAACCACAATAAACACCTCAAAACACACCACGCCAGGGAAGTTCTCAACACTGAAGGCTGA
Protein Sequence: MEIQGMVACPVCTLYLREGMSMHSHLDTHPKDQVIEALVRMYSSERSMPYPHSPASSIVGSFLPVVSEEHVASYKLQQVTSVIHQPILPYPVYSHQPPYIPAGHYVPEPPQECAKSNLLPLESTDMTSNSVINLSQVQDYSTNVDNGMISHHHHSSVGEAIVRHMEHLDSHHDDSVEVFKPEVLFVTPNVEDEEVAESPPTSPRSAISVRTDLTDQRNHHESEMYEEYILSDCNYQDEAARHADQESSKNQDLDGHMDLRVETRDQSLATEERMPPQGEITDPSPRPEWVHHVSNEEPMLSNENVWDLRSDHSEKKHDENKYPCLYCDESLETPTDRRVHIANVHSSTPQVKTDKDKKEVKLSKVCTKCDRTFPSLKSLREHNKIEHPRALKSCDICQEVFVNKKTYIQHLVNIHPLECKVCGKTFTKPNSLTLHLKTHMNVKPHVCHLCPKSFVTPQKLKEHINGHTGAAPILCDMCPRTFKRYSNLKQHKDITHFKVKKKKKDFFCHCGESFQSKKKLARHEETHNVKPKQCPFCNEKFVYVTSLTRHIRRSHDAHYLPKLASNKAKNVQCPVCNLTMLETSLTSHMKYHSEHKKFSCAICGKKFHKKWNLHLHKWTHASRISKPYKCNLCKGAFIRFGDFQAHLRSHLGHKPFTCNHCGMQFIRKQNWQRHEREHSGVKTHACPECGKTFFRSYYLAEHLRVHNGQKPFTCHICNKMSTTKSNHNKHLKTHHAREVLNTEG*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00743964;
90% Identity: iTF_00743964;
80% Identity: -