Basic Information

Insect: Gerris buenoi
Gene Symbol: -
Assembly: GCA_001010745.2
Location: KZ651345.1:991042-993132[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 4.1e-07 5.6e-05 24.9 1.5 1 23 117 139 117 139 0.98

2 14 5.8e-05 0.0079 18.1 0.4 2 23 146 167 145 167 0.97

3 14 0.00021 0.028 16.4 0.2 1 23 282 304 282 304 0.97

4 14 0.001 0.14 14.2 3.0 1 23 310 333 310 333 0.95

5 14 8.2e-07 0.00011 24.0 1.7 1 23 361 384 361 384 0.98

6 14 0.00068 0.092 14.8 0.1 1 23 396 418 396 418 0.93

7 14 0.00011 0.015 17.3 3.1 1 23 425 448 425 448 0.97

8 14 6.9e-06 0.00094 21.0 0.8 1 23 452 474 452 474 0.96

9 14 0.0001 0.014 17.4 1.5 1 23 481 504 481 504 0.96

10 14 0.00051 0.069 15.2 0.0 1 23 510 533 510 533 0.97

11 14 7.5e-07 0.0001 24.1 0.8 1 23 539 561 539 561 0.98

12 14 0.0037 0.5 12.5 0.2 3 23 569 589 567 589 0.97

13 14 5.5e-05 0.0075 18.2 0.4 1 23 595 617 595 618 0.96

14 14 0.0004 0.054 15.5 0.0 1 23 626 648 626 648 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	4.1e-07	5.6e-05	24.9	1.5	1	23	117	139	117	139	0.98
2	14	5.8e-05	0.0079	18.1	0.4	2	23	146	167	145	167	0.97
3	14	0.00021	0.028	16.4	0.2	1	23	282	304	282	304	0.97
4	14	0.001	0.14	14.2	3.0	1	23	310	333	310	333	0.95
5	14	8.2e-07	0.00011	24.0	1.7	1	23	361	384	361	384	0.98
6	14	0.00068	0.092	14.8	0.1	1	23	396	418	396	418	0.93
7	14	0.00011	0.015	17.3	3.1	1	23	425	448	425	448	0.97
8	14	6.9e-06	0.00094	21.0	0.8	1	23	452	474	452	474	0.96
9	14	0.0001	0.014	17.4	1.5	1	23	481	504	481	504	0.96
10	14	0.00051	0.069	15.2	0.0	1	23	510	533	510	533	0.97
11	14	7.5e-07	0.0001	24.1	0.8	1	23	539	561	539	561	0.98
12	14	0.0037	0.5	12.5	0.2	3	23	569	589	567	589	0.97
13	14	5.5e-05	0.0075	18.2	0.4	1	23	595	617	595	618	0.96
14	14	0.0004	0.054	15.5	0.0	1	23	626	648	626	648	0.97

Sequence Information

Coding Sequence: ATGTCGAACTCCATCGACGAGAGCTATAGTTTAAACTTCGAATGGATTTCCGCCGACGCAGGAATAGTGGAAGAGATAGGTGGCGTTGTTGACAAAGACTGTATTGTAGTGCCGTCCATTTCTGACGTAGAGCAGTTTCAAGATAACAATGAATATATCGAGATCCAAGTTACGGAGGAGGAAGTTGTCTCTGACGACTGGCAGGTAGCGGAAGAAGAGGTCGTGTCGGATGACTGGCAGGTGAATTCTAGCCGAGCCGAGGATATGGGGTTTGTCTTAGAAGAGGCAACTGAAGGTGACGTCGATGCTAGTATAGAAGAAAGTGAAGATTATCTCCGTCTTCAGCCTTATCCCTGCAACATTTGTAGCCAGAGATTCAGCAAGAAATCCAGCCTTAACAGCCACATGATGACTCACCAGCTAGAAGATAGTCTAAGGTGCAATCTTTGTGGAGCTCAATACAAACGTAAGTTCGAACTTATAGAACATATGAAAATACATTCATACATGCCTGGCGACCACACCATGATTGATCAATCTCTTTCCACTGTACCGACGTTCAAGTCGGGTAAAATCAAGAAGAAGgtgtcaaaaaagaaaatagctaAAAAGAAGGCTAAATGGCAAACACATTTGGTTCCTCTCACAGAGACTTCATTTGACCCTAAGCCCATTAATCAACTGTTATTGATTAACTCTCTGTTTGATGTTAATTCTGGTTCTTCGACTAGTAAACTCAAATTCGATGACATATTAATCAAAACGGAATCCACTGAAGATGAGGATTATAATGTATTAGACGACGGTGAAGATAAGTTTCCTATCATAGACCCAACACGTCCGTACGTATGTCAGCACTGTGGCATTGGTTTTGCGAGAGAGAAGGCTCTCATATCTCATAATATGATACATGCTGGTGATTCGGCCTTTGAATGTCCCCACTGTCATGAGATGTTTAGCAGTGAGCAGCTGCTGGATACACATCAGACCAACAGGCACCCAAAGATCAAAACTCTgaccaagaaaaagaaaattaagactACAGTAAAGAAGAGTTTAGaaactgacaaattaaaaacttttcagtGTGAACAATGTGATGCATCTTTCACACGGTACAATCAGCTTAAGAGACATCAAAGAAGTGTCCATATTAAGAATGACGTCAGTGTTAAAGAGGAAATATTTGAGTGTGAGGTTTGTAATCTGTCTTTCAGGACAGAAGAAGCTCTTATGAGTCACAGTGATTTACATGTTACCACAGATGAGCTGCACTCGTGCAATACTTGTGGTGAAGAGTACACTGATCTAAGTGAACTACACAGTCACATGAAATCCAAACACAAATGGGGACACTTCTGTCCTGTCTGTGGTACAGCATACCGGGACGCCAAGTCTCTCACTAAGCACCTTTTGACTCACTCTGACTCTGCTCACTTCTTCCCCTGTTCAGTTTGTCACCGGTTATTCTACAACAGAGGTAAGCTAAAGAAGCATATGGAAGTGGCGCACTATGGCAAAGAAGGATATAGGTGTGGGGAGTGTGGAGAGACCTTTCCAGACGGAGCTGCCCTGGCCTCTCATAAACAGTCTCGTCATAATGTCGGGAGACTGTTTCCTTGTACCCAGTGTGGTAAAACATTCACGTCACGTTCCTCCCAGCAGATACACATCAGAGTTCACACAGGAGAGAAACCATATGGCTGCAGATTCTGCTGGAAAGCATTTGCAGATGGGGGTACCCTGCGTAAACACGAGCGAATTCATACAGGAGAAAAACCATATGTCTGTCCTGTCTGTACCAAAGCTTTTAATCAGAGGGTTGTTTTGAGAGAGCATGTTAGAGCCCACCACTCAGAAGGCCGTGGTCGATCTTTTGAATGTACTGTTTGTGGAGAGACTCTGGCTCAGTCAAGAGATCTAGTGGCACACTTGGTTATGCACAGCGATGAGAATACAGCTAAACATCGCCTCCCTAATACTTCTACTCGCAAATACAGTCGGCGTAAAGATTCAACTGCAGCACCTCGTTCCTCTCGCAAGTCACAGCATTATATCCTAGACACCTCTCCTCTTTCACCTTGTAAATAG
Protein Sequence: MSNSIDESYSLNFEWISADAGIVEEIGGVVDKDCIVVPSISDVEQFQDNNEYIEIQVTEEEVVSDDWQVAEEEVVSDDWQVNSSRAEDMGFVLEEATEGDVDASIEESEDYLRLQPYPCNICSQRFSKKSSLNSHMMTHQLEDSLRCNLCGAQYKRKFELIEHMKIHSYMPGDHTMIDQSLSTVPTFKSGKIKKKVSKKKIAKKKAKWQTHLVPLTETSFDPKPINQLLLINSLFDVNSGSSTSKLKFDDILIKTESTEDEDYNVLDDGEDKFPIIDPTRPYVCQHCGIGFAREKALISHNMIHAGDSAFECPHCHEMFSSEQLLDTHQTNRHPKIKTLTKKKKIKTTVKKSLETDKLKTFQCEQCDASFTRYNQLKRHQRSVHIKNDVSVKEEIFECEVCNLSFRTEEALMSHSDLHVTTDELHSCNTCGEEYTDLSELHSHMKSKHKWGHFCPVCGTAYRDAKSLTKHLLTHSDSAHFFPCSVCHRLFYNRGKLKKHMEVAHYGKEGYRCGECGETFPDGAALASHKQSRHNVGRLFPCTQCGKTFTSRSSQQIHIRVHTGEKPYGCRFCWKAFADGGTLRKHERIHTGEKPYVCPVCTKAFNQRVVLREHVRAHHSEGRGRSFECTVCGETLAQSRDLVAHLVMHSDENTAKHRLPNTSTRKYSRRKDSTAAPRSSRKSQHYILDTSPLSPCK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00743956;
90% Identity: iTF_00743956;
80% Identity: -