Gbue041695.1
Basic Information
- Insect
- Gerris buenoi
- Gene Symbol
- -
- Assembly
- GCA_001010745.2
- Location
- KZ653210.1:21371-23236[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.3e-09 1.5e-05 26.2 0.0 4 39 18 52 16 58 0.91 2 2 2.5 4e+03 -0.8 0.0 22 30 359 367 351 368 0.76
Sequence Information
- Coding Sequence
- atgCCAAGAACATATTCTAGAAAATCGAAGAGACAAAGTTGGGATAAAAGTTCCATGGTGAAAGCGATGGAGGATGTGAAGAACGGCGTCCCAGTCAATCGAGCTGCCACCATTTACAGTATTCCGGAGGCGACCCTACGTCGATATGTAAAGAACTATCCGGATAATGAAAATCTACCAAAAAACGCAGGAAGGTTCAAGGCAACATTTAATGATGAGGAGGTAggcttattaaaaaagtatataatagatATCGACAAAAGAGCTTTCGGTTTGACCAAAACTCAATTTGGACAACTTTGTTTCCGCTTTGCAGAGGAATTGGGAGTGGCGCACagatttaatttagataaaaagaCTGCTGGAAGAGATTTTATTGAATCATTTATGAAAAACTGCGGACTTACATTACGTAAACCAGAAGCAACATCAGTTGCACGACTGATGgcatttaataaagtaaatgttAACAATTTCTTTTCCCTTCTTAAAGAAGTAAGGCTAATACATGGGTTTTCAcccaatcaaatttttaatatcgaTGAAACAGGATTTTCAACCGTCCCAACGAAAACCCCCAAAACAATTTCACCTATCGGGAACCGAAGAGTAATAAAACTCTCTTCAGCAGAAAGGGGTAGCAATGTTACTGTTGTATGCTCAATGAATGCTGTGGGATCTTttgttccccctttttttatttttccaagagTAAGGATGAACACACAGTTTTTAGTAGGGGCTCCACCTGGATCAATTGGTGTTGCTCACGAATCTGGTTGGATGACAGCAGAcaatttcttaaactatttgAAGCATTTCAAGAATATTGTTAAACCAGGAGAAAACAACCCTATACTTCTTCTGATGGATAACCACGCCTCTCACACAACACTTGAAGCTATTACTTTTTGCAGGGATAATAACATAACATTACTTGGTTTTCCTCCTCACACAAGTCATAAGCTGCAACCCTTGGATGTTTCATTCTATGGGCCACTAAAAACTGCATACAGTCAGGCCTGCGACAACTTTTTAGTAAACAATCCCGGACAAGTAATTACTATTAAAGATATAGCGCGAATTTTTGGGATAGCATATGTTAGAACAGCTTCAATGAGTTCGGCAATTAATGGTTTCAAAGCTACAGGGATCGAACCATTTGACTGCAGTATTTTTAGTGATTCTGATTTTGAACCATCTATTACTACTGATAGGCCTGAAACCATTTCTGAGCAACCAAATACATCTCTGGATTCTTTGATTGTAAACGACGACCACTCGGCTACTACAAGCGCTTTCTCACTTTCCATACAAGTTGCAGAACCTGAACTCATGGAAAGTGTTGTAAAGTCTAAGTCAGGAGCACTTCCTCCATTACCAACAGCTAATATtaagaaaagtaaaagaaaaattaaaaagctgcCATCCCTTTTGATTTCTAGCTCTCCAGTTAAAAAAGCGTtagagaaaagaagaaaagagatGATAAGGAAAGAGACAAAGCGTAGGGAAAGGGCTACAAATAGGATGAGACAGGCGAAAGAAAAACTTGAAACAAGGAAGGCCCCTTCTTCTAGATCAAAACttagaaaaaccaaaaaatccatgaaattaaaaaagaataagataGATTTATTTGAGAGTGATGACAGTGACTCAGAGAAGAATATTTCGTACGCTGATTCCGATAATGATGACTTAAATATTGAAGAAGATAAAGATTGTATATTATGTGGTGAAGAAGGAAAGGATGAAATATGGTATCAATGTTTCAACTGCAAACTCTGGGCACATTCTGCATGCTCTGGCTTCACAGAAGAAGAAGCTAAATATAAGCCATGGAAGTGCGACTtttgttattaa
- Protein Sequence
- MPRTYSRKSKRQSWDKSSMVKAMEDVKNGVPVNRAATIYSIPEATLRRYVKNYPDNENLPKNAGRFKATFNDEEVGLLKKYIIDIDKRAFGLTKTQFGQLCFRFAEELGVAHRFNLDKKTAGRDFIESFMKNCGLTLRKPEATSVARLMAFNKVNVNNFFSLLKEVRLIHGFSPNQIFNIDETGFSTVPTKTPKTISPIGNRRVIKLSSAERGSNVTVVCSMNAVGSFVPPFFIFPRVRMNTQFLVGAPPGSIGVAHESGWMTADNFLNYLKHFKNIVKPGENNPILLLMDNHASHTTLEAITFCRDNNITLLGFPPHTSHKLQPLDVSFYGPLKTAYSQACDNFLVNNPGQVITIKDIARIFGIAYVRTASMSSAINGFKATGIEPFDCSIFSDSDFEPSITTDRPETISEQPNTSLDSLIVNDDHSATTSAFSLSIQVAEPELMESVVKSKSGALPPLPTANIKKSKRKIKKLPSLLISSSPVKKALEKRRKEMIRKETKRRERATNRMRQAKEKLETRKAPSSRSKLRKTKKSMKLKKNKIDLFESDDSDSEKNISYADSDNDDLNIEEDKDCILCGEEGKDEIWYQCFNCKLWAHSACSGFTEEEAKYKPWKCDFCY*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -