Gbue015385.1
Basic Information
- Insect
- Gerris buenoi
- Gene Symbol
- -
- Assembly
- GCA_001010745.2
- Location
- KZ651336.1:439890-440669[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-11 4.3e-08 34.3 0.0 2 43 13 53 12 55 0.87 2 2 5.2 8.5e+03 -1.9 0.0 2 13 87 98 86 100 0.81
Sequence Information
- Coding Sequence
- ATGTCTCGAAAGGTACAACAACGATTTTTATACTCTGAAGAAGATTTAAGGAAGTcattacaagaaataaaaaacggAATGTCATTACATAAggcatcaaaattattttcaatacctAAAAGCACTTtacacaacaaaataaataataaagtaccgTTGGAAAGGAAAATAGGACCTCAAACAACTTTAACGAAGAGCGAagaactagaaataaaaaataagttacttaaagaaattaaacCAGGCTCGTTGTTGCGTCCAAAAGATTTTAAAGAGGctattaaaaacattcttatTGAACTTCCCAGGAAAAACGTATTTGCAAATAACAGCCCCGGTGACAAATggttcaaactattttttaaaaggcaTCCGGATATACTAAAGAGAAGCACAGATGATACTTCCAAAGTTTATGGTGTAAACAAAATGAGTAGTAAACCAAAAATGGATACGAATATATCTGAGCCTAATCAAGCTAAAATACAACAGAAAGGACATGCATTGGAAGTAAGTAACATGGAAAATGATAAACTAAATAATCAGTTTGAAGAAAGCAAGCAAGAAGAGTTGAAAATTGAGCCAGATGTAAGttctaataatgtaaaatatgtttacaacAACCTCTTCAAGCAGCGTTTCTCCCTTGCGGCCATCTTATATCGTGTATCGATTGTTCATATAGGTAAGAAACGAGGGTTGCTGTGCTTTCGGCTACCACGTTTCGGCTACCATTCCAAGGTCATAGGGTATCTGTCTATCCTTTCTTCCCGCATCTAA
- Protein Sequence
- MSRKVQQRFLYSEEDLRKSLQEIKNGMSLHKASKLFSIPKSTLHNKINNKVPLERKIGPQTTLTKSEELEIKNKLLKEIKPGSLLRPKDFKEAIKNILIELPRKNVFANNSPGDKWFKLFFKRHPDILKRSTDDTSKVYGVNKMSSKPKMDTNISEPNQAKIQQKGHALEVSNMENDKLNNQFEESKQEELKIEPDVSSNNVKYVYNNLFKQRFSLAAILYRVSIVHIGKKRGLLCFRLPRFGYHSKVIGYLSILSSRI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -