Gbue043273.2
Basic Information
- Insect
- Gerris buenoi
- Gene Symbol
- -
- Assembly
- GCA_001010745.2
- Location
- KZ653448.1:51199-51741[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.9e-12 1.3e-08 36.0 0.0 2 37 10 46 9 50 0.90 2 2 1.7 2.7e+03 -0.3 0.1 16 23 141 148 138 150 0.84
Sequence Information
- Coding Sequence
- ATGCCGAAAATTCGGGGGACATGGGAGGAGAATAAAATGAAAGAGGCAATGCAAAAAGTAATTTCGAAAGAAATGAGCATAAGAGAAGCAAGTGAAGCGTATTCAGTGCCTAAAAGTACATTAGGTGATCGAGTAAAATTGCTTTCTGTGGGAGGAGAAGCTACACCTTGTACAGCAAACAAAGGAACGTTTCAAAGGACGTTTGATCAAGAAACAgaagatattttatataatcatgtaaaaaccCTTGATAACCAACTTATGCCTCTCAGCAGAACAGAGTTTTTAAAGCTTGTCTACCAACtagcagaaaaaattaaaatcaagcaTCGtttcaataaagaaaagaaaatggctGGGAAAGATTTTTACTACGATTTTATGAGTCGTCACCAAGAATTGTCGTTGAGGACAGCAGAATCGACCAGCCTACAAAGAGCTGCTGGCTTTAATAAAGCCCAAGTAACAAGATTTTTTGATTGTTTATCAACCTTAAttgagaaatataaatttagtccATCTAACATATTTAATGCAGATTAG
- Protein Sequence
- MPKIRGTWEENKMKEAMQKVISKEMSIREASEAYSVPKSTLGDRVKLLSVGGEATPCTANKGTFQRTFDQETEDILYNHVKTLDNQLMPLSRTEFLKLVYQLAEKIKIKHRFNKEKKMAGKDFYYDFMSRHQELSLRTAESTSLQRAAGFNKAQVTRFFDCLSTLIEKYKFSPSNIFNAD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -