Gbue033439.1
Basic Information
- Insect
- Gerris buenoi
- Gene Symbol
- bab1
- Assembly
- GCA_001010745.2
- Location
- KZ652317.1:62596-90607[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.6e-12 4.1e-09 37.6 0.0 2 39 340 378 339 382 0.90 2 4 2.8e-12 4.6e-09 37.4 0.1 1 39 393 431 393 434 0.95 3 4 1.6e-16 2.5e-13 51.0 0.0 2 43 449 491 448 493 0.95 4 4 1.6e-15 2.7e-12 47.8 0.0 2 44 501 544 500 545 0.93
Sequence Information
- Coding Sequence
- ATGAGTCAACACTATTGTTTACGATGGAACAACTACCAGTCCAATATGACTTCTGTGTTCCACCATTTGCTCAGATCTCAAGCATTTGTGGACGTCACACTGGCCTGTAATGAACAGTCCCTCAAAGCAcacaagGTGGTGCTGTCAGCATGTTCGTCATACTTTCAGAAGCTATTGATGGAGAACCCATGTAAACATCCAACTATCATTATGCCTCAAGACATTTGTTTCTCTGATCTCAAATTCATCATAGAGTTCGTCTACAGAGGTGAAATTGACGTGTCACAAGCAGAACTCcagtctTTGCTAAAGACGGCAGATCAGTTGAAGATAAAAGGACTGTGCGAAGTTCCAGAGAAGGAAAGCAGTCCTCCGCCACCTCCTGAAGTCATGACTCTGGGTTCACCGAGAAGACACAGGCACAGGCCTCATAAACGAAGACTTCACGAATCACTATCTCATATACCACAGCCTGATTACCAGattGGTAATTGTATGGATGCGGCTACAAGTACTGAAGGAGATATAAAACTAGCTGATGAAACTAGTAGAGACGGTGAAGATATGATGGAAATATCACATTCGATGTCTCCTTCATCACATCATCATCCTGAACATGAACATGAACAGCAAGCAGACCATGAACCACAGGAGCATAAGTTTGAGAATGGTCGAAGCGCTGAAATGACCGATAGAGGAGTTGATGCAGCTCCGCTAGAACCATCGGATTTAGCAAGACAAGACGCCGAGACACATAGCAACCATGAATATAACGACGAAGGAGAACCagttaaagtaaaatatgaaaCACTGAGGACTATCGACCAATCTGAAACCTTGGGACATCTTGATGCATCGCGTGAGAGTTCAGATGTTAAAGATGATCATAACTCAATGCAGACGATGATGATTACACCTGAACTTCTTGGACTACTACCTACTTCTCATGGAGATTCTGGAGGGAGTGGAAGCAGTGATATGTGCGAAGGATGCCCTAAGCAAAGTAAAAATTGGACAGCTGACGATATGGAAGCAGCATTAGATGCACTCAGaAACCAAGCTATGAGTTTGACAAAAGCCTCGTTACATTTCGGTATTCCATCTACAACACTATGGCAGAGAGCACATCGCCTCGGTATTGATACACCTAAGAAAGACGGACCGGCTAAATCTTGGACTGAAGACTCGCTTAATGTTGCTCTCGATGCTCTAAGATCAGGAACTATCTCCGCTAACAAAGCCAGCAAAGCATATGGTATACCAAGCAGCACATTGTATAAGATAGCAAGAAGAGAAGGTATAAGATTAGCTGCTCCTTTCAATGCTGCACCAACCACTTGGAATCCCGAGGACTTAGAACGAGCTCTTGAAGCTATAAGGTCTGGTCAAACAACAGTTCAGCGTGCTGCAGCTGACTATGGTATACCATCTGGTACTCTTTATGGAAGATGTAAGAGGGAAGGTATTGGTCTTACGAGAAACAATCCTACACCATGGTCTGAACAAGCTATGAATGACGCTTTGGAAGCTGTCAGAATTGGACAAATGAGTATAAATCAAGCTGCTATAAGTTTCAATCTACCTTATTCATCACTTTACGGACGTTTTAAACGAGGTAAATTCGACAGTTCAAATGGAAACAACGGCTCGGACGATGAACCACATTCCGAGGGACCTCCGACATCTCAAACTAATCAAGGACAACCTTCGTCTAACGCTCCAACACAATCGCAAACATCGAACGGACCTTCAGCATTGATCCAAGCTGCATTAAGCAGTCCGCCACCTCCTCAACCTCAAATAATGCTCGTTCAATATCAAGCTCCAGTACAACCACCAgctatacatatgtatacacAGCCAGCTACATGA
- Protein Sequence
- MSQHYCLRWNNYQSNMTSVFHHLLRSQAFVDVTLACNEQSLKAHKVVLSACSSYFQKLLMENPCKHPTIIMPQDICFSDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPEKESSPPPPPEVMTLGSPRRHRHRPHKRRLHESLSHIPQPDYQIGNCMDAATSTEGDIKLADETSRDGEDMMEISHSMSPSSHHHPEHEHEQQADHEPQEHKFENGRSAEMTDRGVDAAPLEPSDLARQDAETHSNHEYNDEGEPVKVKYETLRTIDQSETLGHLDASRESSDVKDDHNSMQTMMITPELLGLLPTSHGDSGGSGSSDMCEGCPKQSKNWTADDMEAALDALRNQAMSLTKASLHFGIPSTTLWQRAHRLGIDTPKKDGPAKSWTEDSLNVALDALRSGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWNPEDLERALEAIRSGQTTVQRAAADYGIPSGTLYGRCKREGIGLTRNNPTPWSEQAMNDALEAVRIGQMSINQAAISFNLPYSSLYGRFKRGKFDSSNGNNGSDDEPHSEGPPTSQTNQGQPSSNAPTQSQTSNGPSALIQAALSSPPPPQPQIMLVQYQAPVQPPAIHMYTQPAT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00742942;
- 90% Identity
- iTF_00742942;
- 80% Identity
- iTF_00742942;