Basic Information

Insect: Germaria angustata
Gene Symbol: ush
Assembly: GCA_963681545.1
Location: OY812999.1:18797364-18806990[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.084 11 8.0 0.0 6 20 245 259 241 261 0.95

2 9 0.00043 0.054 15.2 0.8 1 23 316 338 316 338 0.98

3 9 0.072 9.1 8.2 1.0 2 21 367 386 367 387 0.92

4 9 0.074 9.4 8.2 2.9 2 21 791 810 790 811 0.93

5 9 0.016 2 10.3 0.0 3 21 853 871 851 872 0.92

6 9 0.18 23 7.0 0.1 1 23 962 984 962 984 0.97

7 9 0.02 2.5 10.0 1.4 1 23 990 1012 990 1012 0.99

8 9 0.00049 0.061 15.1 0.6 1 23 1096 1119 1096 1119 0.96

9 9 0.65 82 5.2 0.7 2 20 1247 1265 1246 1267 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.084	11	8.0	0.0	6	20	245	259	241	261	0.95
2	9	0.00043	0.054	15.2	0.8	1	23	316	338	316	338	0.98
3	9	0.072	9.1	8.2	1.0	2	21	367	386	367	387	0.92
4	9	0.074	9.4	8.2	2.9	2	21	791	810	790	811	0.93
5	9	0.016	2	10.3	0.0	3	21	853	871	851	872	0.92
6	9	0.18	23	7.0	0.1	1	23	962	984	962	984	0.97
7	9	0.02	2.5	10.0	1.4	1	23	990	1012	990	1012	0.99
8	9	0.00049	0.061	15.1	0.6	1	23	1096	1119	1096	1119	0.96
9	9	0.65	82	5.2	0.7	2	20	1247	1265	1246	1267	0.91

Sequence Information

Coding Sequence: ATGGACGATCACACCGAAGAAGCAGATAGAAGAACTCCACAAAACAATCATCATTCCTATATACAACATCAAGAGCAAACAAAAGAGACTGATTTCGAAATGGCAGAAAGTCGAAAAGAAGAGGGTATTGAAATGCCACACAATGAAGAGGGAGATGCTGACATGCAACCACCCCGTCAAAAGAGACCGAAAATGGCTGTGGACGACGAATATAAAGGAAATAGTCCTATCGTGCAATCACCTTTGGCAAGAACTGCGGAAAATTCAAATGACTCTGAAAAATGTGATAATGTGCAAAATCAAGCAGATGAATCTAATTCAAAAGATCGTAGATCTACCAGTCCTTCCTTAAGGACCACAACACCCGCTATAAGTCCATCGAAACAAGAGGAAGAAGAAGACGAAGAAGAAGTTGTAAATGAAAGCATATGTTCTCCCACATCGGGCTCATTGCCCAAATTAAGGCTTAATGCCTTATTGGCCTCCGATCCCGCCCTTATGCCAGATGCCAAAGACTTGAAGGTTGTACATGAAGAATCGCAAACTCAACAAAGAATAGCACGTTTGGAACAGCATTTGCAAAAGCAATTGCAAACAGAAGATTCAGAGGGCTTAGAAACAGAACACATACCCACCCCAGCTCCTGCTGCTCTAGTGGAACCAGTTAAAAAACCATTGGCCCCTGCTGTGGAAGCTCCACCTCAGCGTATGAAGGTTTTCATGTGCATACCCTGCGGCATAGGTTTCAGTTCTCCCTCTACCTTAGAAGCGCATCAAGCGTATTATTGCTCTCATCGGCACAAGGAGACGGACGATGAAAGTTCATTGTCCGCGGCCATAGCTGAGAAAATCTCTGCTTCTCCTACACAATCAAACAATCCTACGTCGAATATATCACTGGCACCCACAGAACCAGCAGCAAAAGTTTCCAAGACCGGCAAACAGTATGCTTGTACGCAGTGTTCCTATAGTGCCGACAAAAAGGTTTCGCTCAATCGCCACATGCGTATGCATCAGACGTCGCCAGCACCCAGCTCCAATGCTTCCAATAATGGCAGTGCCATAATGGAAGACAGTTCTAGTCAACAAGTGGATCGTTACTGTAGCGATTGTGACATACGGTTTAATAACGTGAAGACCTATCGAGCCCACAAGCAACATTATTGCAGTTCCCGAAGAACAGATGGACAATTAACACCAAAATTGGAAGTTTCAACCACTTCGACTACCACGAAAGTTGCACCAGCGGTCAGTGGCGCCATAAGTCCACAGACTCGCACTAAAACGCCTACACCTGCAATGGTAGCCGCAGCTGCGGCTGCAGCAGCAGCTGCTTTACAGCAACCTCCGGCCACACCCTTCCTGGCGTTGCCAACAAATCCTATATTAATAATTCCATATTCCCTGATTCGTTCTGCCAGTCTTATAGCTGGACCTTTGTCATCGCCTTCTTCAGCTGTGGTAAATCCCGATACAACTTGCTTCACTTTGGACAACGGCAATTTGAAACCTTTAGCTAcagctttaaatataaatgcttTAAATGCAGCGAATAGTTTAGCTGCTGCGGCGCCACCAACAGGCCAGCAATTAAACATAGTAGACTCCACACGCCAAACAAATATAAACGAAACGCTGCTCACAGAAAAGAATATCAAGCGAAACGTGGATGAGTCATCGGAAAATACTACTAAAAGAAAAGGTGAAGGCTTAAGgGAATCAGCTCCTTTGGACTTATCACTACGCCGTTCTCCAATTGCTGCTCTGTTGCAAAGGCAACGTTTCAATTCCGCTGCAACATTTTTAGACAATGAACAACAGCGTTTAgatatggaaaatttattagaagCCGGTAAGGAGAACTTGGCGTTGGATGAAACTGGCAGCATAACACCGGAACAAATAGTATGTGCTCCCTCTTTGCCAAATAGTCCTTCAATGAGTCCCTCGCCTCGAAGGCGAACTATGAGTCCCAGAAGTTCTGGTGCTGGCAGTGCTTCTTCTATGTCACCACCAGCCACAATACCTCCGAATGCTTTAAGTGCGGCCACAAATCCCACAAATATATTAGACAACTTACAATTGCGCTCAATGCTGCCAGCAGAATTATTAAATCCTTTGCTTGCAAAGCAAAATATGGAATTGGCTTTAAAACTATCCGCAGCTGCAGCTGCTGCAGTCAGCTCTTCGACTAGTGGTGTAGGTGCTGCCGGTTCTACGCCAGCGGAGTTAGCAGCTGCGGTTGCGGCAGCTACCGGCAGAGGGTCCCTTTTGGGCTTACCCGTTCTGCCACCGTCTGCGTCAACCACAGTTCAAGTGCCATCTGCGAGCACAACTCAGCCACAAATTTATGTTAAACAAGGTGTTTCCAAATGCAAAGAGTGCAATATTGTTTTCTGCAAATATGAAAACTACTTGGCCCACAAGCAGCACTACTGTTCTGCCAGAAATCAAGAGCCGCCTGAAGGTGAAGCCAAGGTATCGCCTACACCGCCCTTGGCCGGCGGAGGAGCCCCGCCTGTTGAAACAACACCTGTAGCATATCAGCAACTAATTTGTGCTGCATGCGGCATTAAATACACCTCATTGGATAATTTAAGAGCTCATCAAAACTTTTACTGTCCAAAAGGTGGTGGTGTGGCAGCGGCCGCCACTGCAGCCGTTGTCGCTAATTCCGACGCTACTCACACAGtttcgaaaaaagaaaaatgcccCAAATGTAAAACTACACATGAACTTACATTACCTTGCCCACCTCCACCGGCATTACAACAACCACCGCCACCCCAAACCATTGCAACAGCAAGTTCACAACTGCAACAGCAGTCGTCATCAACAAGCACCTCTTCTTCTTCTTCAAGTTCCAGTAACAatcaaaatgtttacaaatgcCCCTTATGTGACGCTGTCAGCTTAACAGCCAGTGAGAGTCGAAAGCACATGGAAACCCATGGCACGGTTAAGGCTTTCAGATGCACTATTTGCCGTTATAAAGGCAACACTTTGAGgggaATGCGCACCCATATACGCATGCATTTCGATAAGAAAACTTCGGATATAAACGAAGAGCATTACATGGCCTGTATATTGGAGGATGAGAATATAGAAATACCAAGTGCTGCCTCGCTAAGTCAAGAACATTTGGTGCAACAGTTGGCTGCTGCtcaacaacatcagcaacaacaacaaaagcagttAGTGGCTGCAGCTGCTGTTGTAGCTGCTGGCcttcagcagcaacaacaacaacaacatcagcaacaacagcatTCACAGCAACAGGTGTTCAATTGTgatatttgtaattattcttCAACTTATAAAGGCAACGTGTTACGTCATATGAAGTTGGTGCACCCTCATGTTATCCAAACTTCACCTTCTATCTCACCGGAGGCTGGCGATGTAGATGCAACAGAAACAGCTTCATTAAGCAGCAGCCATAATGGTGACAACGGCCTAAATAATTTCACAATCAAGTCTGAACCCTTGGATCATAATGCCACAAATACTAGTCCTGCGATCCTGTTAAATCCCCATGACAATAACAACTCACCTCTATCGAATATTTCACACAATGCCGCAAACGACTTAATGCATCATATTAAATCCGAACCAATGGAAATTGCACATGAAGCCTCAACATTGCACATACCGCCGCCACAAACTCTTCGATCACCAGCCATAGGACCACCACCTCTACTAAATGCCACTCCAGAAGAgaatattaatcaaaaatattgtcAAACTTGTGACATTTCATTCAACTACATGAAAACTTATTTGGCCCACAAACAATTCTACTGTAAGAATAAACTACGAAGGCCTGACACTAACGACAGCCCGAGTCCTAATGCTGGCAATATAATAACAGGCGTACTATCGCCCAACACCTTAAtggttcaaaaaaataaagaaaatttacaagaaGCCGCCATTTGA
Protein Sequence: MDDHTEEADRRTPQNNHHSYIQHQEQTKETDFEMAESRKEEGIEMPHNEEGDADMQPPRQKRPKMAVDDEYKGNSPIVQSPLARTAENSNDSEKCDNVQNQADESNSKDRRSTSPSLRTTTPAISPSKQEEEEDEEEVVNESICSPTSGSLPKLRLNALLASDPALMPDAKDLKVVHEESQTQQRIARLEQHLQKQLQTEDSEGLETEHIPTPAPAALVEPVKKPLAPAVEAPPQRMKVFMCIPCGIGFSSPSTLEAHQAYYCSHRHKETDDESSLSAAIAEKISASPTQSNNPTSNISLAPTEPAAKVSKTGKQYACTQCSYSADKKVSLNRHMRMHQTSPAPSSNASNNGSAIMEDSSSQQVDRYCSDCDIRFNNVKTYRAHKQHYCSSRRTDGQLTPKLEVSTTSTTTKVAPAVSGAISPQTRTKTPTPAMVAAAAAAAAAALQQPPATPFLALPTNPILIIPYSLIRSASLIAGPLSSPSSAVVNPDTTCFTLDNGNLKPLATALNINALNAANSLAAAAPPTGQQLNIVDSTRQTNINETLLTEKNIKRNVDESSENTTKRKGEGLRESAPLDLSLRRSPIAALLQRQRFNSAATFLDNEQQRLDMENLLEAGKENLALDETGSITPEQIVCAPSLPNSPSMSPSPRRRTMSPRSSGAGSASSMSPPATIPPNALSAATNPTNILDNLQLRSMLPAELLNPLLAKQNMELALKLSAAAAAAVSSSTSGVGAAGSTPAELAAAVAAATGRGSLLGLPVLPPSASTTVQVPSASTTQPQIYVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQEPPEGEAKVSPTPPLAGGGAPPVETTPVAYQQLICAACGIKYTSLDNLRAHQNFYCPKGGGVAAAATAAVVANSDATHTVSKKEKCPKCKTTHELTLPCPPPPALQQPPPPQTIATASSQLQQQSSSTSTSSSSSSSSNNQNVYKCPLCDAVSLTASESRKHMETHGTVKAFRCTICRYKGNTLRGMRTHIRMHFDKKTSDINEEHYMACILEDENIEIPSAASLSQEHLVQQLAAAQQHQQQQQKQLVAAAAVVAAGLQQQQQQQHQQQQHSQQQVFNCDICNYSSTYKGNVLRHMKLVHPHVIQTSPSISPEAGDVDATETASLSSSHNGDNGLNNFTIKSEPLDHNATNTSPAILLNPHDNNNSPLSNISHNAANDLMHHIKSEPMEIAHEASTLHIPPPQTLRSPAIGPPPLLNATPEENINQKYCQTCDISFNYMKTYLAHKQFYCKNKLRRPDTNDSPSPNAGNIITGVLSPNTLMVQKNKENLQEAAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00260189;
90% Identity: -
80% Identity: -